Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq51 105 6e-18 >seq51 Length=2226466 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| || ||||||||||| || || | ||| || |||| |||||||||| | ||| Sbjct 309482 TTTCCCCTACTGACGACGAAGCGCGTCTTTTGGCGCGGAGTGGCCGAGGAGCTGTTCTGG 309541 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || | || ||| |||| || || || || || | || ||||||||| Sbjct 309542 TTCATCAGAGGCTCGACCAACGCCAAAGAACTGTCCGCCAAAGGTATTAAAATCTGGGAC 309601 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 || ||| || || || || ||||||| | || ||| | | ||||| || || Sbjct 309602 GCCAACGCATCCCGGGAATTCCTGGACATCTGCGGCTTCACGGGCAGAGAGGAAGGAGAT 309661 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 | ||||| || ||||| ||||||||| || ||||||| || Sbjct 309662 CTTGGCCCCGTGTACGGCTTCCAGTGGCGATACTTTGGCGC 309702 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || ||||||| || ||||||||| ||||| || ||||| | || || ||||| | Sbjct 309702 GCGCCAAAGTATCGCCACTGGAAGCCGTACACGGGGCCAAGATCTCCTTCCTCTCTGCCC 309643 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | ||| || | ||||||| || || || || ||| ||||||||||| || | || Sbjct 309642 GTGAAGCCGCAGATGTCCAGGAATTCCCGGGATGCGTTGGCGTCCCAGATTTTAATACCT 309583 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 || || || || |||| ||| || | || || | |||||| | |||||||||| || Sbjct 309582 TTGGCGGACAGTTCTTTGGCGTTGGTCGAGCCTCTGATGAACCAGAACAGCTCCTCGGCC 309523 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || || ||| | || || ||||||||||| || ||||| Sbjct 309522 ACTCCGCGCCAAAAGACGCGCTTCGTCGTCAGTAGGGGAAA 309482 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || || |||||||||||||| | ||| ||||||||||||| | || | ||| ||| Sbjct 127174 AATCCAGATGACAGAAGGATAATAATGAGCGCGTGGAACCCAAGTGACATTTCTCAAATG 127233 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || || || || |||||| | || || || || || || ||||| | |||| ||| Sbjct 127234 GCTCTTCCACCTTGCCACGCTCTTGTTCAGTTTTATGTAGCAAATGGAAAATTGTCTTGC 127293 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 || || || ||| || | || ||||| | || || || ||||||||||| |||| Sbjct 127294 CAACTTTACCAAAGAAGTGCTGATATGGGACTTGGTGTACCATTCAACATTGCCTCTTAC 127353 Query 34700 GCTCTGCTCACGTACATGATCGCTCATGT 34728 | ||||| ||| ||||| || ||||| Sbjct 127354 TCGCTGCTGACGCGTATGATTGCACATGT 127382 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || ||||| ||| ||||| | |||| ||||||||||| || || || | Sbjct 127382 ACATGTGCAATCATACGCGTCAGCAGCGAGTAAGAGGCAATGTTGAATGGTACACCAAGT 127323 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | || ||| || || ||||| |||| | ||||| || || || || Sbjct 127322 CCCATATCAGCACTTCTTTGGTAAAGTTGGCAAGACAATTTTCCATTTGCTACATAAAAC 127263 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || || | |||||| || || || ||||| ||| | || | |||||||||||| Sbjct 127262 TGAACAAGAGCGTGGCAAGGTGGAAGAGCCATTTGAGAAATGTCACTTGGGTTCCACGCG 127203 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTT 6825 | ||| | |||||||||||||| || || Sbjct 127202 CTCATTATTATCCTTCTGTCATCTGGATT 127174 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 |||||| || |||||||| ||| | | | |||||| | ||||| || || | Sbjct 309874 GACCAGTTGGCCGACGTGATCCACAAGATAAGGACGAACCCCAACGACAGGAGAATAATC 309933 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 || || ||||||||||| ||| | || |||||||| || || || |||||| | ||| Sbjct 309934 ATCAGCTCGTGGAACCCGGTTGATATTCCCCTGATGGCTCTGCCTCCCTGCCACTCGCTC 309993 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 ||| |||||||| | ||| ||| | || || || || || || || | || ||| Sbjct 309994 GCCCAGTTCTACGTGGACGGTGGCGAGGTCTCGTGTCACCTGTACCAGAGAGCCGGTGAC 310053 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 ||||| | || || ||||| ||||| || |||| | ||||| || | | || ||| Sbjct 310054 ATGGGCCTCGGCGTACCGTTTAACATCGCCTCTTACTCCCTGCTGACTTGTCTCATAGCT 310113 Query 34724 CATGTC 34729 || ||| Sbjct 310114 CACGTC 310119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| ||||| || | | || ||||| | |||| || ||||| ||||| || || | Sbjct 310119 GACGTGAGCTATGAGACAAGTCAGCAGGGAGTAAGAGGCGATGTTAAACGGTACGCCGAG 310060 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| || | || || || || || || || | ||| ||| | |||||||| Sbjct 310059 GCCCATGTCACCGGCTCTCTGGTACAGGTGACACGAGACCTCGCCACCGTCCACGTAGAA 310000 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 ||| ||| | |||||| || || || |||||||| || | ||| ||||||||||| Sbjct 309999 CTGGGCGAGCGAGTGGCAGGGAGGCAGAGCCATCAGGGGAATATCAACCGGGTTCCACGA 309940 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 || || | || || ||||| | |||||| | | | ||| |||||||| || Sbjct 309939 GCTGATGATTATTCTCCTGTCGTTGGGGTTCGTCCTTATCTTGTGGATCACGTCGGCCAA 309880 Query 6856 CTGGTC 6861 |||||| Sbjct 309879 CTGGTC 309874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231890140400