Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4393 104 2e-17 seq26 84.2 2e-11 >seq4393 Length=1805 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||||||||| ||| || ||| | || || || | | Sbjct 914 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 855 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| |||||| |||||||| ||| | || || | Sbjct 854 GACACAATTGAAAAT--GTCAAAGCAAAAATCCAGGACAAAGAGGGTATCCCTCCAGATC 797 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || || ||| | || || | ||| | ||||| || |||| Sbjct 796 AGCAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACA 737 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| ||||||||| || | ||| | || || ||| | || || ||| Sbjct 736 ACATTCAAAAAGAGTCTACCCTACATCTCGTATTACGTCTTCGAGGAGGC 687 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||| ||||| ||| || || | || ||||| | | Sbjct 458 ATGCAGATCTTCGTTAAAACTCTAACTGGCAAAACAATAACCCTAGAAGTCGAGGCCTCA 399 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || ||||| ||||| ||||||||||| | || || | Sbjct 398 GATACGATTGAAAAC--GTCAAGGCTAAAATTCAAGACAAAGAAGGCATACCTCCAGATC 341 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || || ||| | || || | ||| | ||||| || |||| Sbjct 340 AGCAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGATGGACGTACATTGTCGGACTACA 281 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || |||||| ||| | ||||| ||||||||| | || || ||| Sbjct 280 ACATTCAGAAAGAGTCAACTCTCCATTTAGTTTTGCGTCTTCGAGGAGGC 231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||||||||| ||| || || | || ||||| | || Sbjct 1142 ATGCAAATTTTTGTTAAAACTCTTACTGGTAAAACAATCACTCTAGAAGTCGAGGCCTCC 1083 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| | ||| |||||| ||||| || ||||||||| | || || | Sbjct 1082 GACACGATTGAGAAT--GTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCTCCCGATC 1025 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || ||||| || || ||||| | || || | || | | || || || | Sbjct 1024 AGCAGCGTTTGATTTTCGCTGGTAAACAGCTCGAAGATGGGCGTACACTTTCAGACTATA 965 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||||||| Sbjct 964 ACATTCAAAAAGAG 951 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||| ||||| ||| || ||| | || || || | | Sbjct 1370 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAAACCATCACACTGGAAGTTGAGGCCTCT 1311 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||| | ||||| ||||| || ||||||||| |||| | Sbjct 1310 GA-----TACAATTGAAAACGTCAAGGCCAAAATTCAAGATAAAGAAGGTATTCCTCCTG 1256 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || | || |||||||||||||| || | || |||| |||| | || || | Sbjct 1255 ATCAACAGAGATTGATTTTTGCCGGAAAGCAGCTTGAAGACGGGCGCACACTATCGGACT 1196 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| ||||| ||| ||| | |||||||| |||||| | || || ||| Sbjct 1195 ACAACATTCAAAAGGAGTCCACCCTTCATTTGGTCTTGCGTCTCCGAGGAGGC 1143 >seq26 Length=4002310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 ||||||||||||||| ||||| | ||||| ||| ||||| | || |||||| | Sbjct 1458180 AATGCAAATTTTTGTTAAAACATTGACTGGTAAAACCATTACCTTGGAGGTCGAAGCTTC 1458121 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| ||||| || || |||||| |||| || Sbjct 1458120 AGATACCATCGAGAAT--GTCAAGGCTAAAATCCAAGATAAGGAAGGTATTCCCCCTGAC 1458063 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||||||| | || || | | | |||||| || ||| Sbjct 1458062 CAGCAGCGTCTCATCTTTGCTGGAAAACAACTCGAAGATGGTAGAACCTTGTCAGACTAC 1458003 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGAC 28020 || ||||| ||||| ||| | ||| | ||| | ||| | ||||| ||| || Sbjct 1458002 AATATCCAGAAAGAATCCACACTACATCTTGTTCTTCGTCTTCGTGGAGGCAAC 1457949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355838784637515