Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq434 168 2e-36 seq350 154 3e-32 seq4393 149 1e-30 seq30 127 5e-24 seq26 122 2e-22 seq353 84.2 5e-11 >seq434 Length=1254451 Score = 168 bits (186), Expect = 2e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | ||||| |||||||||||||| || || || || | ||| || Sbjct 843864 CGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTG 843923 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||||||||| || || || || ||||||||||| ||||| | ||| Sbjct 843924 CGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCT 843983 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || || || || |||||||| || || || || ||| ||||| | Sbjct 843984 TCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAG 844043 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| ||||||||||| ||||| | |||||| Sbjct 844044 GTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 844084 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| |||||||| || || |||||||| || | || || | |||||||| |||||| Sbjct 844110 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCTTCGAGCTGC 844169 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || | ||||| || || ||||| | || || ||||| ||||| ||| Sbjct 844170 TTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTT 844229 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || |||||||| ||| ||||| | |||||||||||||| ||| Sbjct 844230 GCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAAGGTGATCGTCTTTCCAGTG 844289 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| | |||||| || Sbjct 844290 AGGGTCTTGACAAAGATCTGCATGTT 844315 >seq350 Length=778331 Score = 154 bits (170), Expect = 3e-32 Identities = 150/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||||||||| || ||||| | ||| || | ||||| || ||||| ||||| ||||||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | || ||||| || |||| ||||| |||||||||||||| ||| || |||| Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 ||||||| ||||| |||||||| || |||||||| || |||||||| || ||||| | Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 211105 ACACCTGCATTTT 211117 | | |||||| || Sbjct 635070 AAATCTGCATCTT 635058 >seq4393 Length=1805 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || ||||| || ||||| ||||| || || ||||||||||| | || || Sbjct 465 ACGAAGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGT 524 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || ||||| || | || || || || || || | || Sbjct 525 ACGCCCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACC 584 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || || || ||||| ||||| || || || || ||||||||| || Sbjct 585 TTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAG 644 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||||||||| ||||| | |||||| Sbjct 645 TGTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 686 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || || || || ||||||||||| ||||| || |||| | || Sbjct 694 CGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTA 753 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||| || |||||||| || || || | ||||| || || ||||| | || Sbjct 754 CGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCC 813 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| ||| ||| || ||||| || ||||||||| ||||| || || Sbjct 814 TCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGT 873 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || ||||| |||||||| | ||||| Sbjct 874 GTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| |||||||| || || |||||||| || | || || | |||||||| |||||| Sbjct 28 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTACGGCCATCTTCGAGCTGC 87 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || ||||||||||| ||||||| |||||| || |||||||| || Sbjct 88 TTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCTTCTTTATCCTGGATTTTA 147 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| || |||||||| || || || | || || || || || || Sbjct 148 GCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAGGTAATAGTTTTACCGGTA 207 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| | ||||| Sbjct 208 AGAGTTTTTACAAAAATTTGCAT 230 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| |||||||| ||||| ||||| || |||| || || | || ||||| |||||| Sbjct 1168 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCTTCAAGCTGC 1227 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | ||||| |||||||||| ||||| || || || || || Sbjct 1228 TTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTG 1287 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| || || |||||| ||||| || || ||||| || || || ||| Sbjct 1288 GCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGTTTTGCCAGTG 1347 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| | |||||| Sbjct 1348 AGAGTCTTAACAAAGATCTGCAT 1370 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || ||||| || || || ||||||||||| |||||||| || | ||| || Sbjct 921 ACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGT 980 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||| || || ||||| || | || || || || ||||| | || Sbjct 981 ACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACC 1040 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||| || || ||| || || || || ||||| ||| || || || || Sbjct 1041 TTCTTTATCCTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAG 1100 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || || ||||| || ||||| | ||||| Sbjct 1101 AGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 116 bits (128), Expect = 9e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||| ||||| || || | || || | |||||||| |||||| Sbjct 1624 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGTACGGCCATCTTCAAGCTGC 1683 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || | || || || || ||||| | ||||| ||||| || || || Sbjct 1684 TTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGAATTTTA 1743 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| || || || || ||| ||||| | |||||||||||||| ||| Sbjct 1744 GCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTCTTTCCAGTG 1803 Query 211092 AG 211093 || Sbjct 1804 AG 1805 >seq30 Length=3281913 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| || || | ||| || | |||||||| ||||| ||||| ||||| | Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | ||| ||||| ||||| | || ||||||||||| ||||| |||||||| | Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCT 593839 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || ||||| ||| ||| ||||| | ||||| ||||| ||||| || || || || | Sbjct 593840 CAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGA 593899 Query 211105 ACACCTGCAT 211114 | | ||||| Sbjct 593900 AAATTTGCAT 593909 >seq26 Length=4002310 Score = 122 bits (134), Expect = 2e-22 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || ||||| || || || || || || ||||| ||||| | ||| Sbjct 1458411 TCCACGAAGACGCAGAACCAGGTGGAGTGTTGATTCCTTCTGAATGTTGTAATCAGAAAG 1458470 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 |||||||||||||| | ||||||||| || ||||| || || || ||||| ||||||| Sbjct 1458471 CGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGAAT 1458530 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 || || ||||| || || ||| ||| |||||||| || || || Sbjct 1458531 GCCCTCTTTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATC 1458575 >seq353 Length=1135777 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||| ||||| || ||||| || || | | |||||||||||| Sbjct 144437 AGCACAAGATGAAGTGTGGATTCTTTCTGAATGTTGTAGTCAGACAAGGTCCTTCCATCC 144496 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||| || || |||||||| | | || |||||||| || | |||| Sbjct 144497 TCAAGCTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGGGGGATTCCT 144547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159071132847425