Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4393 102 7e-17 seq350 96.9 3e-15 >seq4393 Length=1805 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||||| | ||||| || | |||||| || ||||||||| || || || || Sbjct 684 CATGCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTC 743 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | | ||| ||| | || || || || ||||| ||||| || | ||| ||||| || | Sbjct 744 CGACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGG 803 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | |||||||||| |||||| ||||| | | | || || | ||| Sbjct 804 AGGGATACCCTCTTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTC 863 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| |||| || || || ||||| |||||||||||||| Sbjct 864 AACTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||||||||| || ||||| || | |||||| || | || || |||||||| || || || Sbjct 951 CTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAA 1010 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | ||||||||| |||| || | | ||||| ||| ||||| ||||| | Sbjct 1011 AATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCCTGAATTTTAGCTTTGACATT 1070 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||| ||| | ||| || || | ||||| |||| || || || |||||||| Sbjct 1071 CTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAAC 1130 Query 39273 AAAGATTTGCAT 39284 ||| |||||||| Sbjct 1131 AAAAATTTGCAT 1142 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| |||||||| || | |||||| || | || || |||||||| || || || Sbjct 1408 TCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAA 1467 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | ||||||||| || | || | | ||||||||| |||||| ||||| | Sbjct 1468 ATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTT 1527 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||| || | || || || | ||| || ||||||| || || ||||||||| Sbjct 1528 TCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAACA 1587 Query 39274 AAGATTTGCAT 39284 || |||||||| Sbjct 1588 AAAATTTGCAT 1598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || |||||||| | || || |||||||| || ||| ||| || Sbjct 1127 TAACAAAAATTTG--CATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTT 1184 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| || || || || | ||||| || |||| |||||||| || || ||||| || | Sbjct 1185 TTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAA 1244 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||| || || | || | | ||||| || ||||| |||| | | | Sbjct 1245 TCTCTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTGGCCTTGACGTTTTCAAT 1304 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| | ||| || |||| ||||| |||| || || || || ||||||||||| Sbjct 1305 TGTATCAGAGGCCTCAACTTCCAGTGTGATGGTTTTGCCAGTGAGAGTCTTAACAAAGAT 1364 Query 39279 TTGCAT 39284 ||||| Sbjct 1365 CTGCAT 1370 >seq350 Length=778331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||| ||||||| ||| || || | || || ||||||||||| || || | Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 39155 TAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG 39214 | | | ||||||||||| || | || ||||||||| ||| || ||||| | Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 39215 CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 | | ||||| | ||| || || | ||||| |||| ||||| || ||||| || | Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 39275 AGATTTGCATCTT 39287 | || |||||||| Sbjct 635070 AAATCTGCATCTT 635058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429517094951285