Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq26 168 2e-36 seq4393 143 6e-29 seq434 138 3e-27 seq350 132 1e-25 seq1043 91.5 4e-13 seq4663 84.2 5e-11 >seq26 Length=4002310 Score = 168 bits (186), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || || ||||||||||| |||| |||||| || | ||| || Sbjct 1457958 ACGAAGACGAAGAACAAGATGTAGTGTGGATTCTTTCTGGATATTGTAGTCTGACAAGGT 1458017 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || || || ||||| ||||| || || || ||||| || |||||||| Sbjct 1458018 TCTACCATCTTCGAGTTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATACC 1458077 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| |||||||| || ||| ||| |||||||| ||||| | ||| || || || Sbjct 1458078 TTCCTTATCTTGGATTTTAGCCTTGACATTCTCGATGGTATCTGAAGCTTCGACCTCCAA 1458137 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || ||||| ||||| | || | ||||||| Sbjct 1458138 GGTAATGGTTTTACCAGTCAATGTTTTAACAAAAATTTGCATT 1458180 >seq4393 Length=1805 Score = 143 bits (158), Expect = 6e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| ||||| || ||||||||||| | ||| || || | | || Sbjct 1377 ACGAAGTCGAAGCACAAGATGGAGTGTAGATTCTTTTTGAATATTATAGTCTGAAAGTGT 1436 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| ||||| || |||||||| || | || || || || || || ||||| Sbjct 1437 ACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACC 1496 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || ||||||||||| |||||| || ||| ||| || |||||||||| ||| || |||| Sbjct 1497 CTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATCGTGTCTGAGGCTTCGACTTCTA 1555 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || || | ||||| | || | |||||| Sbjct 1556 GCGTAATTGTTTTTCCTGTTAGGGTTTTAACAAAAATTTGCAT 1598 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| | || || ||||| || || || | || || |||| || || Sbjct 10 CGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTA 69 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||| || || |||||||||||||| || ||||| ||| Sbjct 70 CGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGAATTCCT 129 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || || ||||| || ||| || ||| || ||||| || | || || ||||| Sbjct 130 TCTTTATCCTGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGACTTCTAAG 189 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | |||||||| || | |||||| Sbjct 190 GTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCAT 230 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| | || || || || || ||||| | ||||| |||| || || Sbjct 1606 CGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGACAGTGTA 1665 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| |||||||| || | || || || || || || |||||| Sbjct 1666 CGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGGATACCT 1725 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| || || ||| || ||| || || || || | |||||| ||||| Sbjct 1726 TCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAG 1785 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 1786 GTGATCGTCTTTCCAGT 1802 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| | || || ||||| || ||||| | ||||| || | | || Sbjct 1150 CGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTG 1209 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| |||||||| || || || || | || ||||| || || ||||||||| Sbjct 1210 CGCCCGTCTTCAAGCTGCTTTCCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCT 1269 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| || || ||| || ||| || || || |||| || || || | Sbjct 1270 TCTTTATCTTGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGT 1329 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||| || | ||| || Sbjct 1330 GTGATGGTTTTGCCAGTGAGAGTCTT 1355 >seq434 Length=1254451 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| | || | || || ||||| |||||||| | |||||| || | | || Sbjct 843864 CGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTG 843923 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||| || || |||||||||||||| || || |||||| Sbjct 843924 CGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCT 843983 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| || || ||| || ||| || || || || | |||||| ||||| Sbjct 843984 TCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAG 844043 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||| || || | ||| || Sbjct 844044 GTGATCGTCTTTCCAGTGAGAGTCTT 844069 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| | || || ||||| || || || | || || |||| || || Sbjct 844092 CGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGACAGTGTA 844151 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| |||||||| || | ||||| || || || || ||||| Sbjct 844152 CGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCC 844211 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| |||||| || ||| ||| || ||||| || | |||||| ||||| Sbjct 844212 TCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCACCTCTAA 844270 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 844271 GGTGATCGTCTTTCCAGT 844288 >seq350 Length=778331 Score = 132 bits (146), Expect = 1e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| ||||||||||| | ||| | ||||| || ||||| || |||||||||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | | || |||||||| ||||| ||||| ||||| |||||||| || ||| || Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||| || || | || || || | |||||||| || ||||| | ||||||| || Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 225704 ACACTTGCATTTT 225716 | | ||||| || Sbjct 635070 AAATCTGCATCTT 635058 >seq1043 Length=14405 Score = 91.5 bits (100), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 7571 TTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTT 7630 |||| || ||||| ||| || | ||||| | ||||||||| || || | ||||| |||| Sbjct 14377 TTACAGCTCATGCATTTATTGTAATTTT-TGTTTTGTTATACCTGTATTAATAGGGGGTT 14319 Query 7631 TCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTA 7690 ||||||| | || |||| |||| || || || | |||| |||||||| | | | Sbjct 14318 TCGGAAACTATTTGATTCCAATAATTATAGGAATTCGTAATATAGCTTTTCCTCGAATAA 14259 Query 7691 ACAATATAAGTTTTTGATTACTACC 7715 |||||||||| |||||| || |||| Sbjct 14258 ACAATATAAGATTTTGACTATTACC 14234 >seq4663 Length=1470 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| |||| ||||||||| | || || || ||||| |||| Sbjct 802 TTCAGGGTGGCCAAAAAATCAAAATAGATGTTGATATAAAATTGGGTCTCCTCCTCCTGT 861 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || ||||| || |||||||| |||| ||||||||| Sbjct 862 AGGGTCAAAGAATGAGGTATTAAAGTTTCGATCAGTTAA 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192448004178830