Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq51 141 8e-29 >seq51 Length=2226466 Score = 141 bits (156), Expect = 8e-29 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 30025 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30084 ||||||||| |||||||| || || || ||||| || || ||| | |||||| | | Sbjct 309688 CCACTGGAAGCCGTACACGGGGCCAAGATCTCCTTCCTCTCTGCCCGTGAAGCCGCAGAT 309629 Query 30085 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 30144 ||||| || || | ||| |||||||||||||||| || | || || |||| || || Sbjct 309628 GTCCAGGAATTCCCGGGATGCGTTGGCGTCCCAGATTTTAATACCTTTGGCGGACAGTTC 309569 Query 30145 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30204 ||||| ||| || || ||||||| |||||| | ||||||||| | || | |||||| Sbjct 309568 TTTGGCGTTGGTCGAGCCTCTGATGAACCAGAACAGCTCCTCGGCCACTCCGCGCCAAAA 309509 Query 30205 GACCCTCTTGGTCGTGAGGAGGGGAAAC 30232 ||| | ||| ||||| || ||||||||| Sbjct 309508 GACGCGCTTCGTCGTCAGTAGGGGAAAC 309481 Score = 109 bits (120), Expect = 4e-19 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| | |||||| || || || || || || | ||||| ||||| |||| | | Sbjct 126847 AAATGTCGCCACTGAAAGCCATATACAGGACCTAAATCTCCTTCTTCTCTGTTAGTTAGG 126788 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||||||| | | ||||| ||||| ||||| || || || || ||||| Sbjct 126787 CCAAGATTGTCCAAAAATGCACGTGAACCATTGGCATCCCAAATGTTGACGCCTTTCTCT 126728 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 || | |||||||| ||||| || ||||| | ||||| ||||||||||| || || | Sbjct 126727 GATAACTCTTTGGCATTTGTTGAGCCTCTAATAAACCAGAGCAGCTCCTCAACTACTCCT 126668 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30230 |||| ||||| | || || || || || ||||| Sbjct 126667 CTCCAGAAGACGCGTTTTGTTGTCAGTAGCGGGAA 126633 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 ||||||||||| || | | || || || ||||| |||||||||||| || || ||| Sbjct 310121 GTGACGTGAGCTATGAGACAAGTCAGCAGGGAGTAAGAGGCGATGTTAAACGGTACGCCG 310062 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||||| || | |||||||| || || ||||||| ||| || || |||||| Sbjct 310061 AGGCCCATGTCACCGGCTCTCTGGTACAGGTGACACGAGACCTCGCCACCGTCCACGTAG 310002 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAG 29899 ||||| | | ||||| ||||| || ||||| || | || |||||||| Sbjct 310001 AACTGGGCGAGCGAGTGGCAGGGAGGCAGAGCCATCAGGGGAATATCAACCGGGTTCCAC 309942 Query 29900 GCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | | | ||| || | |||||| | ||||| |||| || Sbjct 309941 GAGCTGATGATTATTCTCCTGTCGTTGGGGTTCGTCCTTAT 309901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406136246629270