Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq51 141 7e-29 seq64 91.5 1e-13 >seq51 Length=2226466 Score = 141 bits (156), Expect = 7e-29 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||||| ||| | || || || | | ||| ||||| |||||||| || || || || Sbjct 309718 CATGTCCACGTATTTGGCGCCAAAGTATCGCCACTGGAAGCCGTACACGGGGCCAAGATC 309659 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||| || || ||| | |||||| | |||||| || || | ||| |||||||||| Sbjct 309658 TCCTTCCTCTCTGCCCGTGAAGCCGCAGATGTCCAGGAATTCCCGGGATGCGTTGGCGTC 309599 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 27668 |||||| || | || || |||| || ||||||| ||| || || ||||||| |||||| Sbjct 309598 CCAGATTTTAATACCTTTGGCGGACAGTTCTTTGGCGTTGGTCGAGCCTCTGATGAACCA 309539 Query 27669 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 | ||||||||| | || | ||||||||| | ||| ||||| || ||||||||| Sbjct 309538 GAACAGCTCCTCGGCCACTCCGCGCCAAAAGACGCGCTTCGTCGTCAGTAGGGGAAAC 309481 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 ||||||||||| || | | || || || ||||| |||||||||||| ||||| ||| Sbjct 310121 GTGACGTGAGCTATGAGACAAGTCAGCAGGGAGTAAGAGGCGATGTTAAACGGTACGCCG 310062 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 || |||||||| || | |||||||| || |||||||||| ||| ||| || ||||| Sbjct 310061 AGGCCCATGTCACCGGCTCTCTGGTACAGGTGACACGAGACCTCGCCACCGTCCACGTAG 310002 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 27393 ||||| | | |||||| ||||| |||||||| ||| | || |||||||| Sbjct 310001 AACTGGGCGAGCGAGTGGCAGGGAGGCAGAGCCATCAGGGGAATATCAACCGGGTTCCAC 309942 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 | || | ||| || | |||||| | ||||| |||| || Sbjct 309941 GAGCTGATGATTATTCTCCTGTCGTTGGGGTTCGTCCTTAT 309901 Score = 113 bits (124), Expect = 3e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||||| |||| || || ||||| | ||| || || || || || || || | || Sbjct 126869 CATGTCCACATACTTGGCGCCAAAATGTCGCCACTGAAAGCCATATACAGGACCTAAATC 126810 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||| ||||| |||| | ||| ||||||||||| | | ||||| ||||| || Sbjct 126809 TCCTTCTTCTCTGTTAGTTAGGCCAAGATTGTCCAAAAATGCACGTGAACCATTGGCATC 126750 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 27668 ||| || || || || ||||| || | |||||||| ||||| || ||||| | ||||| Sbjct 126749 CCAAATGTTGACGCCTTTCTCTGATAACTCTTTGGCATTTGTTGAGCCTCTAATAAACCA 126690 Query 27669 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 27724 ||||||||||| || || | |||| ||||| | || || || || || ||||| Sbjct 126689 GAGCAGCTCCTCAACTACTCCTCTCCAGAAGACGCGTTTTGTTGTCAGTAGCGGGAA 126633 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 || || || || ||||| ||| || || ||||| ||| ||||| || ||||| || Sbjct 127385 GTTACATGTGCAATCATACGCGTCAGCAGCGAGTAAGAGGCAATGTTGAATGGTACACCA 127326 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 || ||||| || | || ||||| || || || || | | ||||| ||| ||| Sbjct 127325 AGTCCCATATCAGCACTTCTTTGGTAAAGTTGGCAAGACAATTTTCCATTTGCTACATAA 127266 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 27393 |||||| | |||||||| || ||||||||||| | | ||| | |||||||| Sbjct 127265 AACTGAACAAGAGCGTGGCAAGGTGGAAGAGCCATTTGAGAAATGTCACTTGGGTTCCAC 127206 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 27428 |||| || || || | ||||| ||||| || || Sbjct 127205 GCGCTCATTATTATCCTTCTGTCATCTGGATTATT 127171 >seq64 Length=1863977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/145 (76%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGG--AGCCGTCC 48601 |||| ||||||||||||||||| | |||||| |||||||| || ||||| || || | Sbjct 1819196 AGATCGGTGACAAGTTTGCGTCGCGTCACGG-TCAAAAGGGCACCTGTGGCATGCTGTAC 1819138 Query 48602 TGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 48661 || |||||||||||||| ||| | || || | || ||| |||||||||| | Sbjct 1819137 CGA--CAGGAGGACATGCCGTTCACCTGCGAGGGTATCACCCCGGACATCATCATCAATC 1819080 Query 48662 CCCACGCCTTTCCCTCCAGGATGAC 48686 |||||||| |||| ||| | ||||| Sbjct 1819079 CCCACGCCATTCCGTCCCGCATGAC 1819055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369482679155795