Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq203 132 7e-26 seq2 100 4e-16 seq30 86.0 9e-12 >seq203 Length=886859 Score = 132 bits (146), Expect = 7e-26 Identities = 342/516 (66%), Gaps = 14/516 (3%) Strand=Plus/Plus Query 77571 GGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCC 77630 ||||| ||||| | || || ||| | | ||||||| | || ||||| || || Sbjct 356414 GGATAGTAATTGAGATCAATGATTCTGTCGAGATTTTTGGTGACGACTTTCGTAACTTCT 356473 Query 77631 TTTAGTTTAAGAAAATC--AAATCTTC----CATCTATAACAAACATGTTCAAAGCTATA 77684 |||| |||| |||||| || ||| | || | | |||||||| | || || Sbjct 356474 TTTAATTTACCAAAATCGTAAGACTTTTTATCGTCACTGATGAACATGTTGACGGCAATG 356533 Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 ||||||| ||| ||||||||||| |||| | || || || | |||||||||||| Sbjct 356534 GATGCTAAATTGCAAACTGCTACTTCATCCGGTGAGGAGTACTGCACTATCTCGGTACAC 356593 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 | ||||| | | |||| |||||||||||||| || || ||| ||||| ||| Sbjct 356594 AAGTTACTGCTTCTGATGGTGCCCAGATTTTGCTGATTCGACTTGCGGTTGCAGTGGTCT 356653 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 || ||||| ||| | || || || ||||||| || || | | ||||| |||| | Sbjct 356654 TTGTAAAGCATATAAGGCGTTCCAGTTTCAACTTGAGACTTCAGAATAGCCGTCCACAGC 356713 Query 77865 ACTCTAGCTTTTATCATAGAT-TTGTA---TCGCCTCTCTCTTTCATATTGAGTATATAG 77920 ||| || | | | | | ||||| | ||| ||| ||||||| || || | Sbjct 356714 GTTCTGGCATCGA-CTTGCTTCTTGTATTTTTGCCCCTC---TTCATATGTGGTGTACAA 356769 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 |||||| ||| | |||||||| || ||||||||| || || || || ||||| | Sbjct 356770 TTTTTCAAACTCAGCGCCCCAAACGTCGGGCAATCCAGGACACTCTTTGGGACACATGAG 356829 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||| | ||| | ||||| || ||| || | || || ||||| ||||| Sbjct 356830 ACTCCACTTTTCATTATTTAAAACTCTTTGCATGAACAAGTCTGGGATCCACAGAGCGTA 356889 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 ||||||||| | | |||| | ||||| || ||||| Sbjct 356890 AAATAGATCCCTTGCTCTACGCTCTTCTTTACCTGT 356925 Score = 114 bits (126), Expect = 2e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT 78476 || ||||| ||||| ||||| | ||||| | | ||||| ||||| ||| || Sbjct 357402 GTTGGAGACGCATGTGTAAAGTAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTG 357461 Query 78477 TCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || | || | ||| || || | || || || ||||| | |||||||||||| | ||| Sbjct 357462 TCAAGATCTTCCTTG-TGGATGGCAACAGCAACTCGCATTATCATATGCTGAGGACGTTC 357520 Query 78536 AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 78595 ||| |||| ||| ||||| || | || | | || ||||||||||| |||||||| Sbjct 357521 AACTACTTTATCATTAATTTTTAAAAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATA 357580 Query 78596 GTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 ||||| ||||||||| || ||||| || ||||||| ||| |||| |||| ||| Sbjct 357581 ATTGTAACCAAAGTCTCTATCATAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 104 bits (114), Expect = 3e-17 Identities = 211/310 (68%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 || ||||| ||||| ||||| || || || | | ||| | ||||||||| || | || Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 || || | | || |||| || |||||||||||||| | ||| | ||| || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTT 78251 ||||||| | |||||||| | || || || | ||||| || |||| ||| | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 78252 CCACTTGCGCGAATATT-ACTA-ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTA 78309 ||| | || ||||| || || | || | || || |||||||| ||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTGAGA--CCAATGCCTCCTGCTGATTTACTAATTA 357223 Query 78310 GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAA 78369 || || | ||| || ||||| | || || || |||||||| || |||| | || | Sbjct 357224 CGGCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCA 357283 Query 78370 GAAAACAGCT 78379 |||||| || Sbjct 357284 AAAAACAACT 357293 Score = 100 bits (110), Expect = 4e-16 Identities = 172/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 77091 TCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTA 77150 || |||| | || | | ||||||||||||||| || || ||||| || || | ||| | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 77151 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 77210 | ||| |||||||| ||||||||||| || || ||||| || || | |||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 77211 GTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTG--A 77268 || || || |||||||| || | || || | | | || | |||| ||||| | | Sbjct 355892 GTCGATGCTGTTGGCATCGGAG-CAAGAAGCAGCGAGTTGCG-GACCCCGTGTTGGGCTA 355949 Query 77269 TTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGT 77328 |||| |||| | || ||| | ||||||||| | || ||||| ||| | ||| | Sbjct 355950 TTTTGGCTTTCAAGGATGACCAGTTCCAAAGATCAGTTGGAGTAACATTCCACATATCAT 356009 Query 77329 ATTGTA 77334 | |||| Sbjct 356010 ACTGTA 356015 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| || ||||||||||| || || |||||||||| ||| |||||||||| ||||||| Sbjct 355541 TGATCAATAAAAGCTCCTCTGTCCGCAGCCATTTTTAAAATTGTCTTTTGAGAAATTTCC 355600 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 |||| ||||||| | | | ||| | ||||| || Sbjct 355601 CAAACAGTTTTGTACAGCTCTTTTAAGTCATCGGG 355635 >seq2 Length=6207162 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAAC 78560 || || || | ||| | ||| ||||| || | |||| || ||| ||||| ||||||||| Sbjct 5339095 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5339154 Query 78561 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAA 78620 ||||| | | |||||||| || || |||| || ||||| |||||||| || ||| Sbjct 5339155 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5339214 Query 78621 ATAATAACAGAATTTAGTTTATCTTTGT 78648 | ||| ||||||| || |||||||||| Sbjct 5339215 TTGATAGCAGAATTCAGCTTATCTTTGT 5339242 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAAC 78560 || || || | ||| | ||| ||||| || | |||| || ||| ||||| ||||||||| Sbjct 5350394 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5350453 Query 78561 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAA 78620 ||||| | | |||||||| || || |||| || ||||| |||||||| || ||| Sbjct 5350454 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5350513 Query 78621 ATAATAACAGAATTTAGTTTATCTTTGT 78648 | ||| ||||||| || |||||||||| Sbjct 5350514 TTGATAGCAGAATTCAGCTTATCTTTGT 5350541 Score = 98.7 bits (108), Expect = 1e-15 Identities = 314/484 (65%), Gaps = 16/484 (3%) Strand=Plus/Plus Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||| || || | |||||||||||||| | ||| | | | ||||| ||| ||||| Sbjct 5338021 ATAGTAGTTGAGGTCTATAATTTTATCTAAATTCTTTATGATAACTTTGGCCATTTCCTT 5338080 Query 77633 TAGTTTAAGAAAATCA---AATCTTCCATC---TATAACAAACATGTTCAAAGCTATAGA 77686 | |||| |||| | ||| || || | ||||||||| || | || || || Sbjct 5338081 CAATTTATTGAAATTATACAATTTTTTGTCCGCTGCAACAAACATATTAACGGCGATGGA 5338140 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 ||||| ||| || ||||| || |||| | || ||||||| ||||| ||||| | Sbjct 5338141 TGCTAAATTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACGATCTCAGTACACAA 5338200 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 || || | ||||| ||||||||||| || || || |||| |||||| |||||| Sbjct 5338201 GTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATTTGACTTTCGATTGCAGTGGTCCTT 5338260 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 ||||| || |||| | || ||||| | ||| || | | || | |||| | Sbjct 5338261 GTAAAGCATGTACGGCATTCCAGTTTCCACCTGAGAATTCAGGATCGCCGTCCACAGCTT 5338320 Query 77867 TCTAGC-----TTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGC 77921 || || ||| | | || || | || | ||||| | | | | | || | Sbjct 5338321 CCTGGCGTCGATTTGCTTCTTGAATT-TGCCGTCACTCTCGTACTTTTCG----TACAAT 5338375 Query 77922 CGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAAT 77981 || || || || | |||||| ||||||| |||||| || || | | |||||||| | Sbjct 5338376 CGGTCGAAATCGTTTCCCCAGACATCATGCAATCCGGGACACTGTTGCGGGCACATGAGG 5338435 Query 77982 GACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 78041 ||| | || | ||| ||| | ||||| || | ||| || ||||| |||||| | Sbjct 5338436 CTCCACTTGCCGTTGTCCAAAACCCTCTTCATGAACAAATCTGGGATCCAAAGAGCATAA 5338495 Query 78042 AATA 78045 |||| Sbjct 5338496 AATA 5338499 Score = 96.9 bits (106), Expect = 5e-15 Identities = 193/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 77570 AGGATAATAATTAATGTCTATAATTTTATTGAGAT--TTC-TAACAACTACTTTAACCAC 77626 |||||| || || | |||||||||||||| | || ||| | | |||| || ||| Sbjct 5349317 AGGATAGTAGTTTAGGTCTATAATTTTATCTAAATCCTTCGTGATAACT---TTGGCCAT 5349373 Query 77627 GTCCTTTAGTTTAAGAAAATCA---AATCTTCCATC---TATAACAAACATGTTCAAAGC 77680 ||||| | |||| |||| | ||| || || | ||||||||| || | || Sbjct 5349374 TTCCTTCAATTTATTGAAATTATACAATTTTTTGTCCGCTGCAACAAACATATTAACGGC 5349433 Query 77681 TATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGT 77740 || ||||||| ||| || ||||| || |||| | || ||||||| ||||| || Sbjct 5349434 GATGGATGCTAAATTGCACACTGCCACTTCATCCGGTGAGGAGTATTGTACGATCTCAGT 5349493 Query 77741 ACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGA 77800 ||| | || || | ||||| ||||||||||| || || || |||| |||||| Sbjct 5349494 ACACAAGTTGCTGCTCTTGATGGTGCCCAGATTCTGCTGATTCGACTTTCGATTGCAGTG 5349553 Query 77801 GTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 |||||| ||||| || |||| | || ||||| | ||| || Sbjct 5349554 GTCCTTGTAAAGCATGTACGGCATTCCAGTTTCCACCTGAGA 5349595 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| | ||||||||| || || |||| || || || |||||||||||||||| Sbjct 5339648 CACTAAACATTTTTTTTGTCTCTTTATGTAATTTCGAAACTGCTATTCTTGCAGCTAATG 5339707 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 ||| |||||| | ||||| || || || || || |||||||||| ||| | || | Sbjct 5339708 TAGAATAATCTGCATGTTTGGTTGTCATTGTAGCAGCAGTTTCTGCCGCCAAATTGTCAA 5339767 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAAC 78901 || || ||||| || || ||| || || | ||||| Sbjct 5339768 GCTTTACTGTTGTTACTCCTGGATAGAGGCCCTTGATAAC 5339807 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| | ||||||||| || || |||| || || || |||||||||||||||| Sbjct 5350948 CACTAAACATTTTTTTTGTCTCTTTATGTAATTTCGAAACTGCTATTCTTGCAGCTAATG 5351007 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 ||| |||||| | ||||| || || || || || |||||||||| ||| | || | Sbjct 5351008 TAGAATAATCTGCATGTTTGGTTGTCATTGTAGCAGCAGTTTCTGCCGCCAAATTGTCAA 5351067 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAAC 78901 || || ||||| || || ||| || || | ||||| Sbjct 5351068 GCTTTACTGTTGTTACTCCTGGATAGAGGCCCTTGATAAC 5351107 >seq30 Length=3281913 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||| | ||| ||||| || ||||||| ||||| || || |||||||| ||||| | | Sbjct 991051 TTTGAAAGATCCACTTCCTCTACTGTCCAGAATGAAGCTTCCGCTTTTTTGTACATCTGC 990992 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATA 48746 || || || |||| ||||||||||| |||||||| |||| |||| || | | Sbjct 990991 CAGATGTCTGGCCATTGAATTGGGAAAATGACAAATCTTCTTGGGTTTTCCATCAGAAGA 990932 Query 48747 GGTTCCA 48753 ||||||| Sbjct 990931 GGTTCCA 990925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694621519104800