Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq203 123 4e-23 seq30 98.7 1e-15 seq2 84.2 3e-11 >seq203 Length=886859 Score = 123 bits (136), Expect = 4e-23 Identities = 212/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || ||||| ||||| ||||| ||||| || | | ||| | ||||||||| || | || Sbjct 356986 CCAGTATTTTTTTTTAGATCAAGGAATTCAAATACATCGGCATGCCATGGCTCCAAGTAA 357045 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | | || |||| || |||||||||||||| | ||| | ||| || || || Sbjct 357046 ATGGCAAATGCCCCTGGTCTCTTGTTACCTCCCTGATCAACATAGCAGGCTGTATTGTTG 357105 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 ||||||| | |||||||| | || || || ||||||| || |||| ||| | | Sbjct 357106 AAAACTCTTAGCATTGGAACTAACCCATTTGAAATACCATTGGTACCAGCAATTTTGGTG 357165 Query 76847 CCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGA 76906 ||| |||||||| || | | || || || |||||||| |||| |||| Sbjct 357166 CCAGTCGCACGAATGTTGTGTACACTGAGACCAATGCCTCCTGCTGATTTACTAATTACG 357225 Query 76907 GCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGA 76966 ||||| | ||| || || ||| | || || || ||||| || || |||| | || | | Sbjct 357226 GCACATCTTTTTAAAGTATCAAAAATTCCTTCGATACTGTCGTCTGTCATTGTTAGCAAA 357285 Query 76967 AAACAGCT 76974 ||||| || Sbjct 357286 AAACAACT 357293 Score = 114 bits (126), Expect = 2e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 || ||||| ||||| || || | ||||| | | ||||| ||||| |||||| Sbjct 357402 GTTGGAGACGCATGTGTAAAGTAACGCTCAGACATGAAGTTGTAAGTTTCTATAACTTTG 357461 Query 77072 TCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || | ||| | ||| || || | ||||| || ||||| | |||||||||||| ||||| Sbjct 357462 TCAAGATCTTCCTTG-TGGATGGCAACAGCAACTCGCATTATCATATGCTGAGGACGTTC 357520 Query 77131 TACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 || |||| ||| ||||| || | || | | || ||||||||||| |||||||| Sbjct 357521 AACTACTTTATCATTAATTTTTAAAAGATAGCTTCTCTCTAAAGTTTTAAATCCAAAATA 357580 Query 77191 GTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTT 77247 ||||| ||||||||| || ||||| || | ||||| ||| | ||||| | ||| Sbjct 357581 ATTGTAACCAAAGTCTCTATCATAAATGATGGCAGAATTCAGTCTATCCTTGTGTTT 357637 Score = 109 bits (120), Expect = 8e-19 Identities = 174/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 75686 TCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTT 75745 || |||| | || | | |||||||||||||||||| || ||||| || || | ||| | | Sbjct 355772 TCAGTTAGATCTTTCAAGAGATGAGGATTAACAATCTGGAATTCCCCGGAAAGTACGCGT 355831 Query 75746 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 75805 | ||| |||||||| ||||||||||| || || ||||| || || | |||||| || Sbjct 355832 CTTTGGTAGATATTACTCGTATATGGTTCAACTGACTCATTATTGCCAAGAATTTGGGCC 355891 Query 75806 GTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTG--A 75863 || || || || ||||| || | || || | | | || | |||| ||||| | | Sbjct 355892 GTCGATGCTGTTGGCATCGGAG-CAAGAAGCAGCGAGTTGCG-GACCCCGTGTTGGGCTA 355949 Query 75864 TTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGT 75923 |||| |||| | || ||| | ||||||||| | ||| ||||| ||| | ||| | Sbjct 355950 TTTTGGCTTTCAAGGATGACCAGTTCCAAAGATCAGTTGGAGTAACATTCCACATATCAT 356009 Query 75924 ATTGTA 75929 | |||| Sbjct 356010 ACTGTA 356015 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || ||||||||||| || || |||||||||| ||| |||||||||| ||||||| Sbjct 355541 TGATCAATAAAAGCTCCTCTGTCCGCAGCCATTTTTAAAATTGTCTTTTGAGAAATTTCC 355600 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 |||| ||||||| | | | ||| | ||||| || Sbjct 355601 CAAACAGTTTTGTACAGCTCTTTTAAGTCATCGGG 355635 >seq30 Length=3281913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||||| |||||||| |||||||| || || || || || || || || || | || || Sbjct 991322 TACATCTCTGAATGGATGTTTTCTATGGCAATTTGGAAACCATAGAAGCAACGAGCCTCT 991263 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 |||| ||||| ||| || || | ||| ||||||||||| || || ||||| Sbjct 991262 GTAACTTGTACTTCTTGACTGAACCTTTCCACTAAATTCTCATTGACAATGCCATCTGAG 991203 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC 47100 ||||| |||||||||||||| || || || | ||| ||||| || ||| || | | Sbjct 991202 GCAGCGAAAAATGCCAATACGTGCGAGATGAAGTGTTTCTCATCTGTGTTCAACTTTTGC 991143 Query 47101 CAGTCATTGATATC 47114 ||||| || | ||| Sbjct 991142 CAGTCTTTAAGATC 991129 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 47111 TATCNTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 || | ||||| | ||| ||||| || ||||||||||||| || || |||||||| |||| Sbjct 991056 TAACCTTTGAAAGATCCACTTCCTCTACTGTCCAGAATGAAGCTTCCGCTTTTTTGTACA 990997 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAA 47230 | | ||| || || | |||| || || ||||| |||||||| |||| |||| | Sbjct 990996 TCTGCCAGATGTCTGGCCATTGAATTGGGAAAATGACAAATCTTCTTGGGTTTTCCATCA 990937 Query 47231 GTATAGGTTCCA 47242 | | |||||||| Sbjct 990936 GAAGAGGTTCCA 990925 >seq2 Length=6207162 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 77096 ACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAAC 77155 ||||| || | ||| | ||| ||||| || ||||| | ||| ||||| ||||||||| Sbjct 5339095 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5339154 Query 77156 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 77215 ||||| | | |||||||| || || |||| || ||||| |||||||| || ||| Sbjct 5339155 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5339214 Query 77216 ATAATAACCGAATTTAGTTTGTCCTT 77241 | ||| | ||||| || || || || Sbjct 5339215 TTGATAGCAGAATTCAGCTTATCTTT 5339240 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 77096 ACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAAC 77155 ||||| || | ||| | ||| ||||| || ||||| | ||| ||||| ||||||||| Sbjct 5350394 ACAGCAACCCTCATAATCATGTGCTGCGGACGTTCAGCCACCTTGTTATTGATTTTCAAC 5350453 Query 77156 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 77215 ||||| | | |||||||| || || |||| || ||||| |||||||| || ||| Sbjct 5350454 AAGTAACTTCTCTCCAAAGTCTTGAATGCAAAGTAATTGTAACCGAAGTCTCTGTCATAA 5350513 Query 77216 ATAATAACCGAATTTAGTTTGTCCTT 77241 | ||| | ||||| || || || || Sbjct 5350514 TTGATAGCAGAATTCAGCTTATCTTT 5350539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712885875902400