Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4393 127 5e-24 seq350 118 2e-21 seq26 105 2e-17 seq30 86.0 1e-11 seq434 84.2 5e-11 >seq4393 Length=1805 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| |||||||| || |||||||||||||| ||||| || || | | || | | Sbjct 925 AGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAAAGTGTACGC 984 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || ||||| || | | |||||| || | | ||| ||||| Sbjct 985 CCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGGATACCTTCT 1044 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||||||| ||||||| |||| | |||| || ||| ||||| ||||| Sbjct 1045 TTATCCTGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTG 1104 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || || || | ||||| Sbjct 1105 ATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 1142 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| |||||||| ||||||||||| || || ||||| ||||| | | ||| | | Sbjct 469 AGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGACAGAGTACGC 528 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || || ||||| || | | |||||| || | | ||| ||||| Sbjct 529 CCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGGATACCTTCT 588 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| || ||| | || | | || ||| || || ||||| || Sbjct 589 TTGTCTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAACCTCAAGTGTG 648 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||| || |||| |||||| Sbjct 649 ATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 686 Score = 111 bits (122), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | |||||| || ||||| ||||| |||||||| || | || || | ||| ||||| Sbjct 1161 GACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGATAGTGTGCGCCCGTCTTC 1220 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || ||||| ||||| || || | ||||| || || | | || ||||| || ||| Sbjct 1221 AAGCTGCTTT--CCGGCAAAAATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCT 1278 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||| | || | | || || ||| ||||| || || || ||| Sbjct 1279 TGAATTTTGGCCTTGACGTTTTCAATTGTATCAGAGGCCTCAACTTCCAGTGTGATGGTT 1338 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||||||||| || |||| |||||| Sbjct 1339 TTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1370 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| || |||||||||||||| |||||||| || | || || | |||||||| Sbjct 706 ACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCG 765 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || || || | | ||||| || | | ||| || || || || || Sbjct 766 AGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTGTCCTGG 825 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 |||||| ||||||| | || | |||| || ||| ||||| || || || |||||| Sbjct 826 ATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGCCTCAACTTCCAGTGTGATGGTTTTG 885 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || |||| ||||| Sbjct 886 CCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| |||||||| || |||||||| || | || || | |||||||| || Sbjct 255 ATGGAGAGTTGACTCTTTCTGAATGTTGTAGTCCGACAATGTACGTCCATCTTCGAGTTG 314 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || || || || | | ||||| || | | || ||||| || ||||||||||| Sbjct 315 CTTGCCAGCAAAAATCAAACGTTGCTGATCTGGAGGTATGCCTTCTTTGTCTTGAATTTT 374 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| | || | | ||||| ||| ||||| || || || |||||||| || Sbjct 375 AGCCTTGACGTTTTCAATCGTATCTGAGGCCTCGACTTCTAGGGTTATTGTTTTGCCAGT 434 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||||| |||||| Sbjct 435 TAGAGTTTTAACGAAGATCTGCAT 458 >seq350 Length=778331 Score = 118 bits (130), Expect = 2e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||||||||| |||||||||| | ||| | ||||| || || ||| || ||||||| Sbjct 635250 CTTTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGA 635191 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | |||||||||||| | | || ||||| || || || || || ||||||| | | Sbjct 635190 TCAACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTT 635131 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | | || ||| ||| || ||||| || || ||||| |||||||| || || |||| Sbjct 635130 CGATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGA 635071 Query 152095 AGACCTGCATTTT 152107 | | |||||| || Sbjct 635070 AAATCTGCATCTT 635058 >seq26 Length=4002310 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||||||||| || || || |||||||| || | | |||||| || || Sbjct 1458196 AGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCGTCC 1458255 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| || | | ||||||||||| | ||| || || || || Sbjct 1458256 TCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGGATACCCTCTTTATCC 1458315 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| |||| | |||| || ||| || || || || ||||| Sbjct 1458316 TGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGACCTCTAGGGTGATAGTC 1458375 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||| || || | ||||||| Sbjct 1458376 TTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1458408 >seq30 Length=3281913 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| ||||||||||| |||| | ||| | |||||||| || ||| |||||||| | Sbjct 593720 CTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAA 593779 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | ||| |||||||||| | || || ||||| || || || || || || ||| Sbjct 593780 TCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCT 593839 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| || || || || | || ||||| || ||||| || || ||||||| Sbjct 593840 CAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGA 593899 Query 152095 AGACCTGCAT 152104 | | ||||| Sbjct 593900 AAATTTGCAT 593909 >seq434 Length=1254451 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || ||||||||||| || ||||| || | | || | |||||||| || Sbjct 843881 ATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTCGAGCTG 843940 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || || || || || | || ||||| | | ||| ||||| || ||||||||||| Sbjct 843941 CTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGGATACCTTCTTTGTCTTGAATTTT 844000 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| | || | | || ||| || || || | || || || || || || Sbjct 844001 AGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACCTCTAAGGTGATCGTCTTTCCAGT 844060 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| || |||| |||||| Sbjct 844061 GAGAGTCTTGACAAAGATCTGCAT 844084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153740304773595