Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq434 131 1e-25 seq4393 118 8e-22 seq30 114 9e-21 seq26 100 2e-16 seq350 87.8 1e-12 >seq434 Length=1254451 Score = 131 bits (144), Expect = 1e-25 Identities = 179/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | ||| |||| ||||| ||| |||||| || ||||| || || Sbjct 844082 CATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTC 844141 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || |||||||| || || || |||||||| |||||||||| Sbjct 844142 GGACAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGG 844201 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||| || || || || || ||||| | || | || ||||| | | || Sbjct 844202 AGGGATACCCTCTTTGTCTTGGATTTT-TGCTTTGACATTTTCAATCGTGTCAGAAGCTT 844260 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345 ||||||| | || ||||||||||| ||||||||||| || ||||| |||||| | || Sbjct 844261 CCACCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATG-TTTGCC 844319 Query 44346 TGAAAA 44351 |||||| Sbjct 844320 TGAAAA 844325 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| |||| || || | ||||| ||| ||| ||||| || ||||| || | Sbjct 843858 CCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAA 843917 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || || |||||||| || ||||| |||| || || || |||| ||| Sbjct 843918 AGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGG 843977 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||| || || || || ||| | || | || || |||| | ||||||| Sbjct 843978 ATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCACC 844037 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || ||||||||||| ||||| ||||| || ||||| |||||| Sbjct 844038 TCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATG 844085 >seq4393 Length=1805 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| || | ||| |||| ||||| || ||||||||| |||||||| Sbjct 1593 TTGCATGCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTA 1652 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| || | || || |||||||| || || || ||||||||||||||||| Sbjct 1653 GTCGGACAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATC 1712 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||| || || || || ||| | || | || || |||| | Sbjct 1713 TGGAGGGATACCTTCTTTGTCTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGC 1772 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||||||||| | || ||||||||||| ||||| Sbjct 1773 TTCCACCTCTAAGGTGATCGTCTTTCCAGTGAG 1805 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||| ||||| | || ||| | || || |||||||| || || || Sbjct 495 CTCCTTCTGAATGTTATAATCAGACAGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAA 554 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||||||||||||| || | |||||| || || || || ||||| | Sbjct 555 AATCAAACGCTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTGGCCTTCACATT 614 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || |||| | ||| ||||| | || || || ||||| ||||| ||||| || Sbjct 615 TTCAATTGTATCGGAAGCTTCAACCTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGAC 674 Query 44326 GAAGATTTGCATG 44338 ||||| |||||| Sbjct 675 AAAGATCTGCATG 687 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| || || || || | ||| ||| | || || ||||| || || || || Sbjct 1408 TCTTTTTGAATATTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAA 1467 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGT 44265 ||||||||||||||||||| ||| | ||| || || || || || ||| || | | Sbjct 1468 ATCAAACGCTGCTGATCTGGAGGGATACCCTCTTTGTCTTGGAT-TTTTGCTTTGACATT 1526 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | || ||| || || | |||||| || ||||| || ||||| || || Sbjct 1527 TTCAATCGTGTCTGAGGCTTCGACTTCTAGCGTAATTGTTTTTCCTGTTAGGGTTTTAAC 1586 Query 44326 GAAGATTTGCATG 44338 || ||||||||| Sbjct 1587 AAAAATTTGCATG 1599 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | || || || || || || ||| ||||| |||||||| || Sbjct 684 CATGCCTCCTCGAAGACGTAATACGAGATGTAGGGTAGACTCTTTTTGAATGTTGTAGTC 743 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | || | || || || ||||| || ||||| |||||||| |||||||||| Sbjct 744 CGACAATGTACGTCCATCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGG 803 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||| || || ||| || || ||||| | || | || ||||| | || | Sbjct 804 AGGGATACCCTCTTTGTCCTGGATTTT-TGCTTTGACATTTTCAATTGTGTCAGAGGCCT 862 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || || || || || || || || || ||||||||||| Sbjct 863 CAACTTCCAGTGTGATGGTTTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 914 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| ||||| ||||| || || | ||| ||| | || || ||||| || || || || Sbjct 951 CTCTTTTTGAATGTTATAGTCTGAAAGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAA 1010 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||||||||||| | ||| | |||||| || ||| | | || |||| | | Sbjct 1011 AATCAAACGCTGCTGATCGGGAGGGATACCTTCTTTATCC-TGAATTTTAGCTTTGACAT 1069 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || ||||||| || || || || | || || || || || || || || || | Sbjct 1070 TCTCAATCGTGTCGGAGGCCTCGACTTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAA 1129 Query 44325 CGAAGATTTGCATG 44338 | || ||||||||| Sbjct 1130 CAAAAATTTGCATG 1143 >seq30 Length=3281913 Score = 114 bits (126), Expect = 9e-21 Identities = 143/192 (74%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| |||| || ||| | || || ||||| || ||||| || Sbjct 593719 CCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAA 593778 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||||| || | ||| | || ||||| ||| |||||| |||| | ||| Sbjct 593779 ATCAACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTC-ACGTT 593837 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | || ||| ||||||| || || ||||| ||||| ||||| ||||| Sbjct 593838 CTCAATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCAC 593897 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 593898 GAAAATTTGCAT 593909 >seq26 Length=4002310 Score = 100 bits (110), Expect = 2e-16 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | ||| | || ||||| ||||| || ||||| || |||||||| Sbjct 1458174 TTGCATTCCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTA 1458233 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| || |||| || ||||| || || || || |||||||||||||| Sbjct 1458234 GTCAGAAAGAGTTCT-GC-CGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGG 1458291 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | ||| | ||| || || ||| || || |||| | |||| | || ||||||| Sbjct 1458292 TCCGGAGGGATACCCTCTTTATCCTGGAT-TTTAGCTTTGACGTTCTCAATAGTGTCGGA 1458350 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| | || || |||||||| || | |||||| || || || ||||| Sbjct 1458351 TGCCTCGACCTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 >seq350 Length=778331 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 |||||||| |||||||||| || ||| | || || ||||| || || || |||||| Sbjct 635248 TTTTGGATATTGTAATCGGAAAGAGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATC 635189 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 || | |||||| || | || | ||||| || ||| ||||| || | || | Sbjct 635188 AACCTCTGCTGGTCGGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCG 635129 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 ||||| || | | || ||||| | || ||||| || ||||||||||| || ||||| Sbjct 635128 ATGGTATCAGAAGCCTCAACCTCAAGGGTGATCGTTTTACCCGTGAGGGTTTTTACGAAA 635069 Query 44330 ATTTGCAT 44337 || ||||| Sbjct 635068 ATCTGCAT 635061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359966510699565