Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Copidosoma_20floridanum_20[refseq_20GCF_5F000648655.1_202014-05-01] 5,445 sequences; 555,044,930 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4393 123 2e-23 seq434 123 2e-23 seq26 111 1e-19 seq30 105 6e-18 >seq4393 Length=1805 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| ||| || ||| |||||||||||||||||||||||| Sbjct 3 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 62 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || |||||||||||||| || || ||||| || |||||||| | || Sbjct 63 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGG 122 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | || || ||| || |||| || | ||| | | ||||| | ||| | Sbjct 123 AATTCCTTCTTTATCC-TGGATTTTAGCCTTGACGTTTTCAATTGTGTCAGAAGCCTCGA 181 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || |||||||| || || || ||||| ||||| |||||| Sbjct 182 CTTCTAAGGTAATAGTTTTACCGGTAAGAGTTTTTACAAAAATTTGCATG 231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || |||||||||||||||||| || || Sbjct 460 CCACCACGAAGTCGGAGTACAAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAC 519 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || ||||||||||| || ||||| |||| ||||| || || | || Sbjct 520 AGAGTACGCCCATCCTCGAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGTGGG 579 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||| | ||||| | || ||| | || || Sbjct 580 ATACCTTCTTTGT-CTTGAATTTTGGCCTTCACATTTTCAATTGTATCGGAAGCTTCAAC 638 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || ||||| || || || ||||| || || ||||||||| Sbjct 639 CTCAAGTGTGATGGTTTTTCCAGTGAGAGTCTTGACAAAGATCTGCATG 687 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || ||| || |||||||||||||| || Sbjct 916 CCACCACGAAGTCGGAGTACAAGATGGAGTGTAGACTCTTTTTGAATGTTATAGTCTGAA 975 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || |||||||| || || ||||| |||| ||||| || || | || Sbjct 976 AGTGTACGCCCATCTTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGATCGGGAGGG 1035 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | || || ||| ||| |||| |||| || | | |||||| | ||| || Sbjct 1036 ATACCTTCTTTATCC-TGAATTTTAGCTTTGACATTCTCAATCGTGTCGGAGGCCTCGAC 1094 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || |||||||| || || || || || ||||| |||||| Sbjct 1095 TTCTAGAGTGATTGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCATG 1143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| ||| || || |||||| |||||||| |||||||| Sbjct 1599 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCGGA 1658 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || || || | || || ||||||||||| ||||| |||| ||||| || || Sbjct 1659 CAGTGTACGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATC 1712 >seq434 Length=1254451 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| ||| || ||| |||||||||||||||||||||||| Sbjct 844085 GCCTCCTCGGAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 844144 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || |||||||||||||| ||||| |||| || || || || | || Sbjct 844145 CAGTGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAAATCAAACGTTGCTGATCTGGAGG 844204 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||| |||| | || ||||||||| || | | ||||| | |||| Sbjct 844205 GATACCCTCTTTGT-CTTGGATTTTTGCTTTGACATTTTCAATCGTGTCAGAAGCTTCCA 844263 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || ||||| || || || || ||||| || || ||||||||||| Sbjct 844264 CCTCTAAGGTGATCGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 844315 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || ||||| || | ||| || ||| ||| || ||||| || ||||| || Sbjct 843858 CCACCTCGAAGTCGTAAAACTAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCTGAA 843917 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || ||||| || |||||||| | || Sbjct 843918 AGTGTGCGACCATCTTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGTTGGTCTGGAGGG 843977 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||| || | ||| | | || ||| | ||||| Sbjct 843978 ATACCTTCTTTGT-CTTGAATTTTAGCCTTGACGTTTTCAATTGTATCGGAAGCTTCCAC 844036 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || || || || ||||| || || ||||||||| Sbjct 844037 CTCTAAGGTGATCGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATG 844085 >seq26 Length=4002310 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || |||||||||||||| ||||| || Sbjct 1458181 CCACCACGCAGACGCAGAACCAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1458240 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| |||||||| || || ||||| |||| ||||| ||||||| || Sbjct 1458241 AGAGTTCTGCCGTCCTCGAGCTGTTTACCAGCGAAAATCAAACGCTGCTGGTCCGGAGGG 1458300 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| || ||| || |||| |||| ||| | | ||||||| | ||| || Sbjct 1458301 ATACCCTCTTTATCC-TGGATTTTAGCTTTGACGTTCTCAATAGTGTCGGATGCCTCGAC 1458359 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| || ||||||||||| Sbjct 1458360 CTCTAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1458407 >seq30 Length=3281913 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| |||||||| || ||||| | || |||||||| ||||||||||| ||| Sbjct 593722 TTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCGAGCTGTTTGCCGGCGAAAATC 593781 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 | | || ||||||| || | || |||||||||| || || ||||| | Sbjct 593782 AACCTTTGCTGGTCCGGAGGTATGCCCTCCTTGTCCTGTATCTTGGCCTTCACGTTCTCA 593841 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | ||||| | || ||||||| || || || ||||||||||| || || |||||| Sbjct 593842 ATTGTGTCCGAGGCTTCGACCTCCAAGGTGATAGTCTTACCCGTCAGGGTTTTCACGAAA 593901 Query 41855 ATCTGCAT 41862 || ||||| Sbjct 593902 ATTTGCAT 593909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462272534434000