Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cotesia_20vestalis_20[genbank_20GCA_5F000956155.1_202015-03-18] 9,156 sequences; 186,103,588 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3062 248 1e-60 seq949 114 1e-20 seq3636 105 7e-18 >seq3062 Length=42157 Score = 248 bits (274), Expect = 1e-60 Identities = 302/409 (74%), Gaps = 6/409 (1%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||| || ||||| || ||||||||||| || | || || | || |||| || | Sbjct 34300 CTTCGTCACGGGATATTAATTCATTGCTGAACGTCAGTCCAGGCATAAGCCCTCTCTTTT 34241 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | | ||| ||||| || || ||||| || || || |||||||| || |||||||| | Sbjct 34240 TCAACCAGAATATAGAGGCGAAACTTCCGCTGAAGAAAATACCTTCGACAGCTGCAAAAG 34181 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | | | | ||| |||||| | || | | | || ||||| ||||| ||||| || | Sbjct 34180 CTATTACTCTTTCAGCAAAAGTCGCTTTGTCATTACTTATCCAATTTAATGCCCACTCAG 34121 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTC---GT 93350 |||| || || ||| || || || ||||| || || || ||||| || || || || Sbjct 34120 CTTTCTTAGCAACACATGGAAGAGTCTCGATCGCATTGAACAGGTACTCGCGTTCTTTGT 34061 Query 93351 CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCA 93410 | | ||| |||||| ||||| || | || ||||||||||||||| || ||||| || | Sbjct 34060 C--ATTCTT-TATGTAGGTATCAATGAGCAAAGAATACATTTCAGAGTGAACATTTTCAA 34004 Query 93411 TTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATC 93470 |||| ||||| || ||||||||||| | |||||| |||| ||||||||| || |||| Sbjct 34003 TTGCTATTTGAAAACCGTAGAAACAACGAGCTTCGGTGACCTGCACTTCCTGGCTGAATC 33944 Query 93471 TCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 | || || ||||||||||| ||||||||||| || || || ||||| || Sbjct 33943 TTTCCACAAGATTTTCATTTACTATACCATCAGAAGCCGCGAAAAAGGC 33895 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| || | || | ||| || |||||||||||||| ||||| ||||| ||||||||| Sbjct 33572 CTTTAGATAAGTCAATTTCCTCTACAGTCCAAAACGACGCTTCAGCTTTCTTGTACATAG 33513 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||||||| ||| | ||| || ||||| | ||||| | | || || ||||| | | Sbjct 33512 CCCATATATCTGGCCATTCTATCGGAAAAACAACAAATCTACGTGGATTTTCTTTCAAAA 33453 Query 93699 ACGGCTCTAGTTGTGGGTCAAA 93720 || |||| ||| | |||||| Sbjct 33452 GGGGTTCTATTTGAGCGTCAAA 33431 >seq949 Length=7698 Score = 114 bits (126), Expect = 1e-20 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126271 GTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGGGT 126328 |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 5428 GTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGATGGGAGCGTGGGT 5487 Query 126329 TCGAACCCCACACCTGACAAATTATTATTG 126358 ||||||||||||| | ||||||||| ||| Sbjct 5488 TCGAACCCCACACTTAGCAAATTATTTTTG 5517 >seq3636 Length=26727 Score = 105 bits (116), Expect = 7e-18 Identities = 69/75 (92%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 126270 GGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGGG 126327 ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 18623 GGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGATGGGAGCGTGGG 18682 Query 126328 TTCGAACCCCACACC 126342 ||||||||||||||| Sbjct 18683 TTCGAACCCCACACC 18697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556797067281440