Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3141 91.5 2e-13 >seq3141 Length=1574671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 348/539 (65%), Gaps = 8/539 (1%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| |||| || || ||||| ||||| || || ||||| || || || || Sbjct 1346012 TTTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTTCCCTCGAGCGAGATGAACT 1345953 Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||| || || || | | || | || |||| | | ||||| ||| | Sbjct 1345952 CCATGAAGCTGAACGGGTTCTTGGTGTTGTAGATCTTTTCG--TTGCCCAGCTCGAGCAG 1345895 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | | |||||| ||||| || || || || |||| | ||||||||||| || | || Sbjct 1345894 GAGGCGATCCGCGACAAACTCGATGTACTGCGACATCAGCTCGCAGTTCATGCCGAGCAG 1345835 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC-CTTAATAA 16910 || || || |||| ||| | || ||||| || || || ||||| | | | Sbjct 1345834 GTCGACGGGCAGGGCTTTCGTGAGGAACTCCTGCTCGATGACGACGGCTTCGCGGATGAT 1345775 Query 16911 TACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGA 16970 | | ||| || ||||| | ||| || | || || | ||||| ||||| || | Sbjct 1345774 TTCGAGC-ACGCGTTCTTTGGAGGGCTTCTGGACCAGGTAGCGGAACATGAGACAGGCAA 1345716 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 | ||| || | ||||||||| | ||| || ||||| || || |||| ||||||| Sbjct 1345715 AGTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTCAGGCCGGGCA 1345656 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | || || ||||| | ||| || || | ||||| || ||||| || |||| Sbjct 1345655 TGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCGCTGAAGAAGATGCCCT 1345596 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCAT 17149 |||||| || || |||| | || ||| | | | |||| ||| | ||| ||||| Sbjct 1345595 CGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGCTTGCT-CGAGATCCAG 1345537 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 ||| | |||| || || |||| ||| | || || ||| || || || || || || Sbjct 1345536 TTCATCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCGATCGCGTTGAACAA 1345478 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || || || || |||||| ||| ||| | ||||||||| || ||||| Sbjct 1345279 ATGTAGGTGTCAATCAGCAGCGAGTACATCTCGCTGTGCACGTTCTCCATCGCGATCTGG 1345220 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || |||| | || || ||| | ||| || || | || Sbjct 1345219 AAGCCGTAGAAGCAGCGCGCCTCCGTCACCTGCACCTCCTGGCTGAACCGCTCGACCAGG 1345160 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 || ||||||||||||||||| |||||||| || |||| Sbjct 1345159 TTCTCGTTCACGATGCCGTCCGAAGCGGCGAAGAAGGCCA 1345120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525085786280