Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3114 122 9e-23 >seq3114 Length=1216407 Score = 122 bits (134), Expect = 9e-23 Identities = 192/268 (72%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 118929 CTCGAATTTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGT 118987 |||| | |||||||| || ||||| || || || ||||| ||| || ||| |||| Sbjct 660745 CTCGTAGTTCATGTAGCGAATCTTGCCGAAAACTTCCCGCTCGCGCCA-GCCCTGATCGT 660803 Query 118988 GGAGTCCTGCTACTGC-CCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAAC 119046 ||| || || | ||| ||| | ||| || ||||||||||| ||||| |||||| | | Sbjct 660804 GGATGCCGGCGA-TGCTCCACATACAGCCGACGTATCCGTTCGGATCACGTCCGTCCAGC 660862 Query 119047 TCGTACTTATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCC 119104 | ||| ||||| | |||||| | | || || | | ||||| | ||| ||| Sbjct 660863 TGGTAACGGTCGTTGAGGTAGATTGCG--GTTTCGAGCGCCTCCTCCGGCGACTTGGTCC 660920 Query 119105 ATTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAA 119164 |||| || || || || ||||||||||| || | | | ||||||||||| ||||| || | Sbjct 660921 ATTCGAGGATCTTCTTCGCCCAGTACATGCGCAGAAAGCCGTGCATTTTGCCCTCCTTGA 660980 Query 119165 TCATCTGAAGTTGTGCGGTGTTCCATAG 119192 |||||| ||||| || | |||||| || Sbjct 660981 CCATCTGCAGTTGGGCCGAGTTCCACAG 661008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394128811720