Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2849 131 1e-25 >seq2849 Length=471161 Score = 131 bits (144), Expect = 1e-25 Identities = 248/355 (70%), Gaps = 14/355 (4%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||||| || || | ||||| ||||| ||| | ||||| ||||| |||||||| Sbjct 134282 GGTGACCTAGGTCCTGTGTACGGATTCCAATGGCGTCATTTCGGAGCAAAATATAAAACA 134223 Query 18849 TGTCAATCAAACTATTTACAGC----AAGGAATCGATCAGCT-GCAAACTGTTATAGATA 18903 || | || | | ||||| | |||| ||||| ||||| || | || ||| | Sbjct 134222 TG-CGATGA---TGATTACACCGGCGAAGGGATCGACCAGCTTGCTGAA-GTAATAAACC 134168 Query 18904 CAATTAAAACAAA-CCCAGAAAGCCGACGAATGATTAT-ATCGTCTTGGAATCCAAAGGA 18961 || || || || |||| | | |||| || || || | || ||||||| || ||| Sbjct 134167 GCATAAAGACCAATCCCACCGATC-GACGCATTATCATGAGCG-CTTGGAACCCGGTGGA 134110 Query 18962 TATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGG 19021 || || ||||| ||||| ||||| ||| ||| |||||| | |||| | |||| Sbjct 134109 CATTCCGCAAATGGCTCTACCACCATGCCACTGTTTAGCTCAGTTCTTCGTTTCCGACGG 134050 Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 ||||| || |||||| | ||||| |||| | ||| |||||||| |||||||||||||| Sbjct 134049 AGAATTGTCATGCCAACTTTACCAACGATCAGCGGACATGGGCCTGGGGGTACCGTTCAA 133990 Query 19082 CATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 ||||| | || ||||| ||||| |||| | || || || || |||||| || Sbjct 133989 TATTGCCAGCTACGCACTGCTTACGCACATGATTGCCCACGTCACCGGACTTCAA 133935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399488560543695