Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2443 159 3e-34 seq3133 114 1e-20 seq3140 105 6e-18 seq2724 104 2e-17 seq3122 98.7 8e-16 seq1557 89.7 4e-13 seq3064 86.0 5e-12 >seq2443 Length=228914 Score = 159 bits (176), Expect = 3e-34 Identities = 238/336 (71%), Gaps = 9/336 (3%) Strand=Plus/Minus Query 23610 GCACACCCCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAG 23669 ||| | |||||| | ||||||| |||||||| |||| | ||| || ||||||||||| || Sbjct 221132 GCAAATCCCAATCACGCCGCAGGCCAGCCGGGCGCCCGCATTTCCGGTGGTCTTGCTCAG 221073 Query 23670 CGGGTGCTCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAA 23729 | ||| |||| | |||||| || || | || | ||||||||||| | ||||||||| Sbjct 221072 CTCGTGTCCGCCCACGCCCAGATCGTCCGGATCGGCGTGCACGACCACGGTGCGGCCCAG 221013 Query 23730 TATACTCAACGGCCCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGC 23789 || |||| ||| || ||| | ||| |||||| | |||| | || || || Sbjct 221012 GATGCTCAGCGGTCCGCTCAGCGAGATCTGCTTGTCGGTGATGT---CGACCTTG---GC 220959 Query 23790 GGTGCAGCCCGCA---GAGCGCACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTC 23846 || |||||| | ||| ||||||| || ||| |||| || | | ||||| Sbjct 220958 CACGCCCCCCGCATCGGCCACCACATTGCCCAAATCTCCGGCGTGACGGACGGACGCGTC 220899 Query 23847 GGGCGCGCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTT 23906 || ||||||||| || || | |||||||||||| || || || ||||| ||||| Sbjct 220898 CGGGGCGCCGTGTTCCTTGCCGTGCGGGTTAAAGTGCGGCCCGGCCGAGGTGCACCCGTT 220839 Query 23907 GCTGGTGTCGCCGAATTCGTGCACGTGAAAACCGTG 23942 | || ||||||| || ||||| | ||| || ||||| Sbjct 220838 GGTGTTGTCGCCAAACTCGTGGATGTGGAAGCCGTG 220803 >seq3133 Length=1421877 Score = 114 bits (126), Expect = 1e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| ||||||||||| || ||||| ||||||| Sbjct 291920 CCACCACGCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 291861 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| ||||| || | || || | |||||| ||| ||| Sbjct 291860 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 291801 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 291800 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGCTCGACC 291741 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCT 21186 || | || |||||||| || || | |||||||| || || ||||| || || ||| Sbjct 291740 TCGAGAGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCCTGGATGTCT 291683 >seq3140 Length=1521851 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | ||||||||||| || ||||| ||||| | | Sbjct 429097 CCACCGCGCAGACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 429156 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| ||||| || | || | | |||||| || || Sbjct 429157 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGGG 429216 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||| || | ||| || || ||||| Sbjct 429217 ATTCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATCGTGTCCGATGGCTCGACC 429276 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 || | ||| ||||||||||| || | || ||||| || || ||||| ||||||| Sbjct 429277 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTGAATCT 429332 >seq2724 Length=367895 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | || |||| || | || |||||||| || ||||| ||||| Sbjct 201665 GTTTCCACCGCGAAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 201724 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||| || | ||||||| ||||| || || || | || || | ||||||||| Sbjct 201725 GGACAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGG 201784 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| |||||| ||||| | ||| || || |||||| Sbjct 201785 AGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAGGGCTC 201844 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| |||||||| ||||| | || || ||||| || |||||| Sbjct 201845 AACCTCCAAGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATT 201896 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||||| || | || |||||||| || ||||| || |||| Sbjct 202807 TTCCTCCGCGGAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG 202866 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | ||||||||| ||| || || || | || || | ||||||||| || Sbjct 202867 ACAAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGG 202926 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| || || | ||| || || |||||| Sbjct 202927 GAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGA 202986 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||||||||| | || || || || || ||||| Sbjct 202987 CCTCCAAAGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 203035 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||| | || |||||||| || || || ||||| | | Sbjct 202581 CCACCACGCAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGAC 202640 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || ||||| || || || | || || | ||||||||| || Sbjct 202641 AGAGTACGACCATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 202700 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | ||| || || |||||| Sbjct 202701 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACC 202760 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||||||||| | ||||| || || || |||||| Sbjct 202761 TCCAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATT 202808 >seq3122 Length=1344033 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||| | || |||||||| || ||||| ||||||| | Sbjct 595590 CCTCCGCGCAGACGCAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 595531 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||||||||| || || || |||| || | ||| || || ||| Sbjct 595530 AAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATCAGACGCTGTTGATCTGGGGGA 595471 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | ||| ||||| |||||| Sbjct 595470 ATTCCCTCCTTATCTTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACC 595411 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||||||||| || || || || ||||| || || ||||| Sbjct 595410 TCCAGGGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 595364 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | ||||||| ||||| || || |||| || | ||| ||||| | Sbjct 593310 TCCACCCCGCAGGCGCAGCACCAGATGCAGCGTCGATCCCTTCTGGACGTTGTAGTCGGA 593251 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | ||||||||||| ||||| || | || || | |||||| || ||| Sbjct 593250 CAAGGCGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCTGGGGG 593191 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||||||| || | | || || || ||||||| Sbjct 593190 GATACCTTCCTTGTCCTCGATCTTGCCCTTGATGTTCTGGATCGTGTCGACGGGCTCGAC 593131 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||| || ||||| | || || || || || ||||| Sbjct 593130 GTCCAGGGTAATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 593083 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||| | |||||||||||||| ||||| ||||||| Sbjct 596274 CCTCCGCGCAGACGCAGTACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAA 596215 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||| ||| || || || | || || | ||| || || || Sbjct 596214 AGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 596155 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | ||| ||||| |||||| Sbjct 596154 ATTCCCTCCTTATCTTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACC 596095 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || ||||| || || ||||| Sbjct 596094 TCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||| | || |||||||| || ||||| ||||||| Sbjct 595362 CCTCCGCGCAGACGCAGGACCAGATGTAGTGTAGACTCCTTCTGGATGTTGTAGTCCGAA 595303 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||| ||| || || || | || | | ||| || || || Sbjct 595302 AGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGAGGG 595243 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| || || | ||| ||||| |||||| Sbjct 595242 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCGATGGTATCCGAGGGCTCGACC 595183 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || ||||| ||||| ||||| Sbjct 595182 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAATATCTGCAT 595136 >seq1557 Length=61445 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTG 38787 ||||||||| || ||||||||| ||| | |||||| | || ||||||| | |||||| Sbjct 45454 CGGCGGCGTCGGTCTGAACCTGGTCGGAGCGAACCACCTGATGCTGCTGGATCTGCACTG 45395 Query 38788 GAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAA 38844 ||||||||| | ||| ||| || || |||||| | |||| |||||||||| || Sbjct 45394 GAACCCGCAGCTGGAGGCGCAAGCCCAGGACCGCGTGTACCGGGTGGGCCAGAAGAA 45338 >seq3064 Length=1001057 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTG 38787 ||||||||| || |||||||| ||| | |||||| | || ||||||| | |||||| Sbjct 893425 CGGCGGCGTCGGTCTGAACCTAGTCGGAGCGAACCACCTGATGCTGCTGGATCTGCACTG 893366 Query 38788 GAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAA 38844 ||||||||| | ||| ||| || || |||||| | |||| |||||||||| || Sbjct 893365 GAACCCGCAGCTGGAGGCGCAAGCCCAGGACCGCGTGTACCGGGTGGGCCAGAAGAA 893309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422242881133436