Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq2849 95.1 1e-14 >seq2849 Length=471161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 225/332 (68%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 20227 GGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286 ||||||||||| ||||| |||||| | ||||| ||||| ||||| ||||| | Sbjct 134273 GGTCCTGTGTACGGATTCCAATGGCGTCATTTCGGAGCAAAATATAAA-ACATGCGATGA 134215 Query 20287 A-ATTATTTTGGACAAGGAGTAGATCAA-TTACAAAATGTTATTAATTTAATTAAAACGA 20344 |||| || |||| | || || || | || || || || || || || | Sbjct 134214 TGATTACACCGGCGAAGGGATCGACCAGCTTGCTGAA-GTAATAAACCGCATAAAGACCA 134156 Query 20345 ACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGG 20404 | || | ||| || | ||||| | |||| |||||| | || | || ||||| Sbjct 134155 ATCCCACCGATCGACGCATTATCATGAGCGCTTGGAACCCGGTGGACATTCCGCAAATGG 134096 Query 20405 CTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATTGTCGTGT 20463 || | || ||||| || || | || || || | |||| | | |||||||| || Sbjct 134095 CTCTACCACCATGCCAC-TGTTTAGCTCAGTTCTTCGTTTCCGACGGAGAATTGTCATGC 134037 Query 20464 CAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTAT 20523 ||| | || |||||||| || || ||||| ||||| || || ||||||||||| || || Sbjct 134036 CAACTTTACCAACGATCAGCGGACATGGGCCTGGGGGTACCGTTCAATATTGCCAGCTAC 133977 Query 20524 GCGCTGCTTACGTATATGATTGCACATGTTAC 20555 || ||||||||| | |||||||| || || || Sbjct 133976 GCACTGCTTACGCACATGATTGCCCACGTCAC 133945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399168572910595