Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3152 102 2e-16 >seq3152 Length=1715593 Score = 102 bits (112), Expect = 2e-16 Identities = 259/395 (66%), Gaps = 22/395 (6%) Strand=Plus/Minus Query 253997 CGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCT 254056 ||| || || || |||| | |||| || || ||||| || || || || || | Sbjct 1293182 CGATCTGCCGAATCTGCTGCTGTACGGACCGCCTGGAACGGGTAAAACCAGTACGATTTT 1293123 Query 254057 GGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 |||| ||||||| ||||| || || | || | |||||| | || ||||| || Sbjct 1293122 GGCGGCGGCCCGACAGCTGTTTGGGGACATGTTCAAG---GAGCGCATTCTGGAGCTAAA 1293066 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT 254176 ||| || ||||| ||||| | | ||| | || ||||| | || || || || || | Sbjct 1293065 CGCCTCGGACGATCGCGGTATTGCGGTCATTCGGAACAAGGTGAAAACGTTTGCCCAGTT 1293006 Query 254177 GTCGATTTCGTCGTTCCAACCCGGC--------------TGTCCGCCTTTCAAGCTCGTG 254222 | | | | || |||||||| ||||| || |||||| |||| Sbjct 1293005 GGC--TGCCAGCGG---AACCCGGCCGGACGGAAAGCCGTGTCCACCGTTCAAGATCGTT 1292951 Query 254223 ATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATG 254282 |||||||||||||| || ||||||| || || ||| |||| |||||||| || ||| Sbjct 1292950 ATCCTGGACGAGGCCGATGCCATGACCCACGCGGCTCAGGCCGCGCTCCGCCGGACAATG 1292891 Query 254283 GAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342 |||| | || ||| || || ||| |||| || || |||||||| ||| ||| Sbjct 1292890 GAGAAAGAAACCAAGACGACACGGTTCTGCTTGGTTTGTAATTACGTGTCTCGGATTATC 1292831 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 | ||| | | || || ||| ||||||| || || Sbjct 1292830 GAACCGATCACGTCGCGTTGCACCAAGTTCCGGTT 1292796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073722774548928