Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3071 324 2e-83 seq3141 91.5 2e-13 >seq3071 Length=929925 Score = 324 bits (358), Expect = 2e-83 Identities = 1209/1885 (64%), Gaps = 28/1885 (1%) Strand=Plus/Plus Query 62035 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 ||||||||| ||||| || |||| | |||||||| || || || |||||||||| Sbjct 832866 CCTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTC 832925 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | ||||| || || | |||| ||||| || || || || |||||| || | | Sbjct 832926 CGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGG 832985 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | || || | ||||| || | || || || ||||||||||| |||| ||| || | Sbjct 832986 GTTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGG 833045 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATA 62273 ||||||| ||| || || | |||||||| | ||||| || | ||||| | Sbjct 833046 CCATTTTGATGCAGGTTTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATGT 833105 Query 62274 TCTTCTGGAAG--GTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 ||| ||| || | | ||| ||||| || | || || | ||||| | Sbjct 833106 GCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTCA 833165 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | || || | ||| | | ||||| | || | |||||||| |||| || || | Sbjct 833166 TGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGACCT 833225 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 |||| || || |||| || | ||| |||| | || ||| |||||||| | || | Sbjct 833226 GGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGATT 833285 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 | || || || | ||||| || || || || || ||||| || || | | | | Sbjct 833286 CGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGAGT 833345 Query 62512 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACG 62571 ||| | |||| | |||||| || || || | |||| | ||| || || || | Sbjct 833346 TTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGGATG 833405 Query 62572 GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 62630 | | || || || || || || || | | || | || | || Sbjct 833406 GGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGAC-AGCCATCGTAC 833464 Query 62631 GTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAA 62690 || || || | ||| |||||||| || | || ||| || ||||| | |||||||| || Sbjct 833465 GTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGTAG 833524 Query 62691 ATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 62750 |||||||| ||||| | || || || | ||| |||||| ||| || | || | Sbjct 833525 ATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGCGC 833584 Query 62751 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810 | || || |||||||| || | ||| || ||||| || ||||| || | || | | | Sbjct 833585 ATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCATG 833644 Query 62811 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 || ||| | || || |||| || || || || || || |||||||| || |||||| Sbjct 833645 TTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGATTT 833704 Query 62871 CT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---T 62924 | ||| ||| || || || ||||| || || | || ||| | | || | Sbjct 833705 TTTGTGACTATT--TTAGAG-ACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGGT 833761 Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCAT 62982 | ||||||||||| | || | || |||| || |||||||| | || | | | | Sbjct 833762 TTGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGA- 833820 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 || || | | || || |||||||| || |||||| || || || | || || | Sbjct 833821 -CGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGCT 833879 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 | || ||||| ||| || || ||||| || || ||| | || || || || | || Sbjct 833880 GGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACCT 833939 Query 63103 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63162 | || || || ||||| ||| | | ||||||| | || |||| | | || Sbjct 833940 GCGACTCGATGATCGCGAACCACAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCCTT 833999 Query 63163 CTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---AATC 63219 | | ||||| || |||| |||||||| || |||||| | ||| | || Sbjct 834000 CGTTCTCGTACGTCGTGTACAGCTTCTCGAACTCCTCACCCCAAG---TTTCCGGGAGTC 834056 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 ||||| || | ||| ||||||| |||| || ||| | ||| ||||| ||||| | Sbjct 834057 CGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATGA 834116 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 | ||||| |||||||| || || || | || | | | ||||| || || | Sbjct 834117 ACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCGG 834176 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 | || || || | || | ||| | | ||||| ||||||||||||| || || | Sbjct 834177 TGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATCG 834236 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | || ||||| ||||| || ||||| || | ||| | || ||||| || |||| Sbjct 834237 CAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAAA 834296 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | |||| ||| || | | ||||| || || || || || |||| || || || Sbjct 834297 CCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCCT 834356 Query 63520 TGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | || || || | | | ||| | | || ||||| || ||| || ||||| || || Sbjct 834357 TCGCCCGGATGCAGTGCACATTCACA--CCGATTCCACCCGCCGACTTGGAGATCAACGC 834414 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 ||| | || | |||||| || || || || || ||||| ||| |||| | | || || Sbjct 834415 GCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGAA 834474 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 || |||| || |||| || |||| ||| | ||| || || |||||||| Sbjct 834475 GCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGT 834534 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 ||| | || || || || |||||||||||||| || | ||| || ||| || Sbjct 834535 AAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGTG 834594 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 ||| || || || || ||||| | ||||||||| || | || || | ||| || || Sbjct 834595 AATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTTGAT 834654 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 |||| || ||| || |||| || || || ||||| |||||||| |||||| || Sbjct 834655 CTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTCCCG 834714 Query 63878 TTCGTAAATAATAACCGAATTGAGC 63902 ||||| || || ||||||| ||| Sbjct 834715 GTCGTAGATGATGGCCGAATTAAGC 834739 >seq3141 Length=1574671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 ||||| | ||| || || ||| ||| || |||||||| | || | ||||| || Sbjct 1345731 AACATGAGACAGGCAAAGTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAG 1345672 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| ||||||||||| || ||||| || ||||| ||||| ||| Sbjct 1345671 AAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCG 1345612 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GC 33750 |||||||| || || || || || || || | | | ||| ||| | ||| || Sbjct 1345611 CTGAAGAAGATGCCCTCGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGC 1345552 Query 33751 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | | | ||||| || ||||| || ||||| || || ||||| |||| ||| || Sbjct 1345551 TTGCTCGAGATCCAGTTCATCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCG 1345492 Query 33810 ATGGCATTAAA 33820 || || || || Sbjct 1345491 ATCGCGTTGAA 1345481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792635604880