Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3071 336 3e-87 >seq3071 Length=929925 Score = 336 bits (372), Expect = 3e-87 Identities = 1215/1887 (64%), Gaps = 34/1887 (2%) Strand=Plus/Plus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 ||||||||| ||||| || |||| | |||||||| || || || |||||||||| Sbjct 832866 CCTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTC 832925 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | ||||| || || | |||| ||||| || || || || |||||| || | | Sbjct 832926 CGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGG 832985 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | || || | ||||| || | || || || ||||||||||| |||| ||| || | Sbjct 832986 GTTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGG 833045 Query 65008 CCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 65065 ||||||| ||| || ||| ||| |||||||| | ||||| || | ||||| | Sbjct 833046 CCATTTTGATGCAGGT-TTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATG 833104 Query 65066 ATCTTCTGGAAG--GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 ||| ||| || | | ||| ||||| || || || || | ||||| Sbjct 833105 TGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTC 833164 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || || || | ||| | | ||||| | || | |||||||| | || || || Sbjct 833165 ATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGACC 833224 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || || || || |||| || | ||| |||| | || ||| |||||||| | || Sbjct 833225 TGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGAT 833284 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 || || || || | ||||| || || || || || ||||| || || | | | Sbjct 833285 TCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGAG 833344 Query 65304 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 |||| | |||| | |||||| || || || || |||| | ||| || || || Sbjct 833345 TTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGGAT 833404 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 65422 || | || || || || || || | | || | || | || Sbjct 833405 GGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGAC-AGCCATCGTA 833463 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 || ||||| | ||| |||||||| || | |||||| || ||||| | |||||||| || Sbjct 833464 CGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGTA 833523 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 |||||||||||||| | || || || | ||| |||||| ||| || | || | Sbjct 833524 GATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGCG 833583 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | || || |||||||| || | ||| || ||||| || ||||| || | || | | | Sbjct 833584 CATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCAT 833643 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA-- 65660 || ||| | || || |||| || || || || || || |||||||| || ||| Sbjct 833644 GTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGATT 833703 Query 65661 -TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATC--- 65716 ||| |||| ||| || || || ||||| || || | || ||| | || || Sbjct 833704 TTTTGTGACTATT--TTAGA-GACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGG 833760 Query 65717 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCA 65774 | | ||||||||||| | || | || |||| || || ||||| | || | | | | Sbjct 833761 TTTGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGA 833820 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 || || | | || || |||||||| || |||||| ||||| || | || || Sbjct 833821 --CGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGC 833878 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 || || ||||| ||| || || ||||| || || ||| | || || || || | | Sbjct 833879 TGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACC 833938 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTT 65954 || || || || ||||| ||| | | ||||||| | || |||| | | Sbjct 833939 TGCGACTCGATGATCGCGAACCACAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCCT 833998 Query 65955 TCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---A 66009 || | ||||| | ||||| | || |||||||| || ||||| | | ||| | Sbjct 833999 TCGTTCTCGTACGTCGTGTACAGCTTC--TCGAACTCCTCACCCCA---AGTTTCCGGGA 834053 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 ||| ||||| || | ||| ||||||| |||| || ||| | ||| ||||| |||| Sbjct 834054 GTCCGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCA 834113 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 | || ||||| |||||||| || || || | || | | | ||||| || | Sbjct 834114 TGAACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGC 834173 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | || || || || | || | ||| | | ||||| ||||||||||||| || | Sbjct 834174 CGGTGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGA 834233 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || | | || ||||| ||||| || ||||| || | ||| | || ||||| || | Sbjct 834234 TCGCAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGT 834293 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 |||| |||| ||| || | | || || || | || || || |||| || || | | Sbjct 834294 AAACCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGC 834353 Query 66310 CACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 | | || || || | | | ||| | ||| ||||| || ||| || ||||| || Sbjct 834354 CCTTCGCCCGGATGCAGTGCACATT--CACACCGATTCCACCCGCCGACTTGGAGATCAA 834411 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 ||||| | || | ||| || || || || || |||||||| || |||| | | || Sbjct 834412 CGCGCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAG 834471 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 || || |||| || |||| | || |||| ||| | ||| || || ||||| Sbjct 834472 GAAGCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTG 834531 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 |||||| | || || || || |||||||||||||| || | ||| || ||| Sbjct 834532 CGTAAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCC 834591 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 ||||| || || || || ||||| | ||||||||| || | || || | |||| || Sbjct 834592 GTGAATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTT 834651 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 || |||| || ||| || |||| || || || ||||| |||||||| |||||| Sbjct 834652 GATCTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTC 834711 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAG 66694 || ||||| || || |||| || || Sbjct 834712 CCGGTCGTAGATGATGGCCGAATTAAG 834738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658146711675640