Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3013 89.7 4e-13 >seq3013 Length=769064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 33577 ATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTACGA 33635 || ||||||||||| || || |||||| | ||||||| || ||||| || |||| Sbjct 172532 ATCGGCGACAAGTTCGCCTCCCGTCACGGTC-AGAAGGGTACCTGCGGAATCCAGTACCG 172590 Query 33636 CCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCA 33695 |||| ||||||||||||||| ||| || | ||||||| | ||||||||||||| Sbjct 172591 CCAGGAGGACATGCCGTTCACCTGCGAAGGACTCACCCCGGACATCATCATCAACCCGCA 172650 Query 33696 TGCGTTCCCCTCGCGCATGAC 33716 || ||||||| || ||||| Sbjct 172651 CGCCATCCCCTCCCGTATGAC 172671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356219832795913