Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3141 105 7e-18 seq2724 105 7e-18 seq3071 98.7 1e-15 >seq3141 Length=1574671 Score = 105 bits (116), Expect = 7e-18 Identities = 344/522 (66%), Gaps = 13/522 (2%) Strand=Plus/Plus Query 52552 CCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACT 52611 || |||||| ||||||| ||| ||||| |||| |||||| | | | | |||| Sbjct 1345502 CCCTGTGTGAAGAAAAAGGCTGACTGGGCGATGAACTGGATCTCGAGCAAGCACGCCAAC 1345561 Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTT 52671 |||| ||| || ||||||| || || || || || | || || || || || Sbjct 1345562 TTTGGCGAGCGCGTGGTCGCTTTCGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTC 1345621 Query 52672 GCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGA 52730 ||| | || || | |||| || | ||| | | ||||||||||| || || ||||| Sbjct 1345622 GCGTCCATCTTCTGGCTCAAGAAGCGTGGCC-TCATGCCCGGCCTGACCTTCTCGAACGA 1345680 Query 52731 GTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGC- 52789 | |||| ||||||||||| ||| | ||||| || ||||| ||| | || | ||| Sbjct 1345681 GCTGATCTCGCGCGACGAGGGACTCCACACCGACTTTGC----CTGTCTCATGTTCCGCT 1345736 Query 52790 GCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACA 52849 | | | || || | ||| | || || || | || ||||||| || Sbjct 1345737 ACCTGGTCCAGAAGCCCTCCAAAGAACGCGTGCTCGAAATCATCCGCGAAGCCGTCGTCA 1345796 Query 52850 TTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAAC-GCGACC 52908 | || | ||||| | ||| | || | ||||| || | ||||||||| |||| | Sbjct 1345797 TCGAGCAGGAGTTCCTCACGAAAGCCCTGCCCGTCGACCTGCTCGGCATGAACTGCGAGC 1345856 Query 52909 ATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCG 52968 |||||| |||||||||||||||| ||||| | || || | |||| || || | Sbjct 1345857 -TGATGTCGCAGTACATCGAGTTTGTCGCGGATCGCCTCCTGCTCGAGCT-GGGCAACGA 1345914 Query 52969 AAATA-CTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAA 53027 ||| | ||| || | ||||| || || ||| | ||| ||||||||||| || Sbjct 1345915 AAAGATCTACAACACCAAGAACCCGTTCAGCTTCATGGAGTTCATCTCGCTCGAGGGAAA 1345974 Query 53028 AACAAACTTTTTCGAG-AGACGTGTGGGCGAGTACAAAATGT 53068 || ||||| |||||| ||| | || ||||||||| ||| || Sbjct 1345975 GACGAACTTCTTCGAGAAGAAG-GTCGGCGAGTACCAAAAGT 1346015 >seq2724 Length=367895 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | || | ||||||||| || || || || || ||| Sbjct 202580 GCCACCACGCAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGA 202639 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||| ||||| || || || |||||||||| ||||| || ||||| Sbjct 202640 CAGAGTACGACCATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGG 202699 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | |||||| || Sbjct 202700 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 202759 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||||| ||||| ||||| || ||||| Sbjct 202760 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 202807 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||||| || ||||| || || ||||| ||||| | Sbjct 202809 CCTCCGCGGAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 202868 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || | ||| || || || |||||||||| ||||| || || || Sbjct 202869 AAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 202928 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | |||||| ||| Sbjct 202929 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACC 202988 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 202989 TCCAAAGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 203035 >seq3071 Length=929925 Score = 98.7 bits (108), Expect = 1e-15 Identities = 669/1062 (63%), Gaps = 35/1062 (3%) Strand=Plus/Plus Query 153344 CGCCAGTTTCAAA-CTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGT 153402 || || ||||| | || || ||||| || | | || | |||||| | || || | || Sbjct 833487 CGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGTAGATGGTTTCGAAGATTTGCTGGT 833546 Query 153403 TCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCA 153462 |||| ||| | |||||| ||||||| | ||||| || || || || ||||||| Sbjct 833547 TCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGCGCATCAGGATGAACGCGTCGGCCA 833606 Query 153463 AACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAA 153522 || || | || || || || || || || ||||| || || || || | || Sbjct 833607 TTCCCTGGACACCGATTCCGATCGGGCGGTGACGCATGTTGGAGCGCTTGGCCTCCGGAA 833666 Query 153523 CAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAG 153582 | || ||| | ||| |||||||||||| || | | | | ||| ||| | || Sbjct 833667 CTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGATTTTTTGTGACTATTTT----AGAG 833722 Query 153583 AATGC----AACAGTTGAAAATCAAACGT----TCCATTAATGATATATTTGTTGACGGC 153634 | | | | | || || ||| ||| ||| | ||| | | ||||||| || Sbjct 833723 ACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGGTT-TGACAAACATGTTGACCGC 833781 Query 153635 AATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGC 153694 ||||| ||||||||||| |||||| ||||||| || | || | || ||||||| Sbjct 833782 GATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGACGAGTACTCCACGATTTCCGT 833841 Query 153695 ACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGC 153754 || | || || ||||| |||| || || ||||| || ||||| ||||| Sbjct 833842 GCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGGTTGCAAGC 833901 Query 153755 GTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGCAT 153814 ||||||||| |||||||| || || || ||| | || || || || | || | Sbjct 833902 GTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACCTGCGACTCGATGATCG--CGAAC 833959 Query 153815 CAATGTGACCGCGGGCATTTGA--TCGCGAAACTGGC--CCTT-GTCTTCGTAGTGTTTG 153869 || || | | || |||| | |||| | || |||| || ||||| || Sbjct 833960 CA--CAGATCCTGAGC-CTTGACCTTACGAATGTAGCGTCCTTCGTTCTCGTACGTCGTG 834016 Query 153870 TACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACAC 153929 ||| | || ||||| ||||| | || | || ||||||| |||| || ||| Sbjct 834017 TACAGCTTCTCGAACTCCTCACCCCAAGTTTCCGGGAGTCCGGGACAGTCGTGCGGGCAC 834076 Query 153930 ATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGG 153989 ||||| |||| | || | | || || ||| || | ||| |||| ||| || Sbjct 834077 ATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATGAACAGATCCGGAATCCACAGC 834136 Query 153990 GCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAG 154049 |||| | || ||| || || || || |||| ||||| || || || Sbjct 834137 GCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAAGTCCAAA 834196 Query 154050 ACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGC--- 154106 | || | || || | ||||||||||||| || | || || || ||| Sbjct 834197 AACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATCGCAAACGCCCCGGGCCGCTTG 834256 Query 154107 TTGCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGA 154166 ||||||||||| | |||| ||| || | |||||| |||||| ||||| || | ||| Sbjct 834257 TTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAAACCCTCAGCATCGGCACCAGC 834316 Query 154167 CCGCTGGCGGTACCGTTTGTAGATTTAAT---CTTGCTGTTGCGGCCTCGAACGCTGTTT 154223 ||| | | | | ||||| || ||| | ||| || || | || | || || Sbjct 834317 CCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCCTT-CG--CCCGGATGCAGTGC 834373 Query 154224 ACGTTTAATCCAATACC-GCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTT 154282 || || | || || || |||||| |||||||||| ||||| | |||| |||| Sbjct 834374 ACATTCACACCGATTCCACCCGCCG-ACTTGGAGATCAACGCGCACTGCTTCAGCGTGTC 834432 Query 154283 ATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCGG 154342 || || || || |||||| ||| ||||| ||||| || || || |||||| Sbjct 834433 GTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGAAGCACGACGACAGCTGCGG 834492 Query 154343 AGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGT 154384 | | ||| | || |||||||||||||| |||||||| Sbjct 834493 ACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGT 834534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044337263200