Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3071 376 4e-99 seq3141 107 3e-18 >seq3071 Length=929925 Score = 376 bits (416), Expect = 4e-99 Identities = 1223/1884 (65%), Gaps = 28/1884 (1%) Strand=Plus/Plus Query 78707 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 ||||||||| ||||| || |||| | |||||||| || || || |||||||||| Sbjct 832866 CCTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTC 832925 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | ||||| || || | |||| |||||||| || || || |||||| || | | Sbjct 832926 CGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGG 832985 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | || || | ||||| || | || || || ||||||||||| |||| ||| || | Sbjct 832986 GTTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGG 833045 Query 78887 CCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 78944 ||||||| ||| || ||| ||| |||||||| | ||||| || | ||||| | Sbjct 833046 CCATTTTGATGCAGGT-TTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATG 833104 Query 78945 ATCTTCTGGAAG--GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 ||| ||| || | | ||| ||||| || || || || | ||||| Sbjct 833105 TGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTC 833164 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || || || | ||| | | ||||| | || | |||||||| | || || || Sbjct 833165 ATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGACC 833224 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || || || || |||| || | ||| |||| | || ||| || ||||| | ||| Sbjct 833225 TGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGAT 833284 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || || || || | ||||| || || || || |||||||| || || | | | Sbjct 833285 TCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGAG 833344 Query 79183 TTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 |||| | |||| |||||| || || || | |||| ||||| || || || Sbjct 833345 TTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGGAT 833404 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTAT 79302 ||| | ||||| | || || || || || || || ||| | | || ||| Sbjct 833405 GGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGACAGCCATCGTAC 833464 Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 ||||| || | ||| ||||| ||||| | |||||| || ||||| | || ||||| || Sbjct 833465 GTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGTAG 833524 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTT 79422 ||||||||||| || | || || || | ||| ||||| ||| || | || | Sbjct 833525 ATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGCGC 833584 Query 79423 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 79482 | || || |||||||| || | ||| || ||||| || ||||| || | || | | | Sbjct 833585 ATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCATG 833644 Query 79483 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542 || || | || || |||| || || || || || || |||||||| || ||||| Sbjct 833645 TTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGATTT 833704 Query 79543 CT---GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA----TCGTCCATC 79595 | ||||||| || || || ||||| || || | || ||| | | |||| Sbjct 833705 TTTGTGACTATT--TTAGAG-ACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGGT 833761 Query 79596 TATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCA 79653 | | ||||||||||| | ||||| || |||| || || ||||| | || | | | | Sbjct 833762 T-TGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGA 833820 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 || || | | ||||| ||||| ||||| |||||| ||||| || | || || Sbjct 833821 --CGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGC 833878 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 || || ||||| ||| || || ||||| || || ||| |||| || || || | | Sbjct 833879 TGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACC 833938 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTT 79833 || || || || ||||| ||| | | ||||||| | || |||| | | Sbjct 833939 TGCGACTCGATGATCGCGAACCACAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCCT 833998 Query 79834 TCTCTTTCGTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 || | ||||| | ||||| | || |||||||| || |||||| || | || Sbjct 833999 TCGTTCTCGTACGTCGTGTACAGCTTC--TCGAACTCCTCACCCCAAGTTTCCGGGAGTC 834056 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 | ||||| |||| || ||||||| |||| || | | | ||| ||||| ||||| | Sbjct 834057 CGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATGA 834116 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | ||||| |||||||| || || || | || | | | |||||| || || | Sbjct 834117 ACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCGG 834176 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 | || || || | || | ||| | | ||||| ||||||||||||| || || | Sbjct 834177 TGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATCG 834236 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || || || ||||| || ||||| || | ||| | || ||||| || |||| Sbjct 834237 CAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAAA 834296 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | |||| ||| || | | || || || | || || || |||| || || | || Sbjct 834297 CCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCCT 834356 Query 80192 TGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 | || || || | | | ||| | | || ||||| || ||| || ||||| || || Sbjct 834357 TCGCCCGGATGCAGTGCACATTCACA--CCGATTCCACCCGCCGACTTGGAGATCAACGC 834414 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| | || | ||| || || || || || || ||||| || |||| | | || || Sbjct 834415 GCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGAA 834474 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || |||| || |||| | || |||| ||| | ||| || || |||||||| Sbjct 834475 GCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGT 834534 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 ||| | || ||||| || |||||||||||||| || | || || ||| || Sbjct 834535 AAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGTG 834594 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 ||| || ||||| || ||||| | ||||||||| || | || || | |||| || || Sbjct 834595 AATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTTGAT 834654 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 |||| || ||| || |||| || || || ||||| |||||||| |||||| || Sbjct 834655 CTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTCCCG 834714 Query 80550 TTCGTAAATAATAACCGAGTTGAG 80573 ||||| || || |||| || || Sbjct 834715 GTCGTAGATGATGGCCGAATTAAG 834738 >seq3141 Length=1574671 Score = 107 bits (118), Expect = 3e-18 Identities = 178/253 (70%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||||| | ||| || || ||| ||| || |||||||| | || || ||||| || Sbjct 1345731 AACATGAGACAGGCAAAGTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAG 1345672 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACC 50068 || || || |||||||| ||||||||||| || ||||| || |||||||| || || | Sbjct 1345671 AAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCG 1345612 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-- 50126 | | |||||||| || || || ||||| || || || | | ||| ||| | |||| Sbjct 1345611 CTG--AAGAAGATGCCCTCGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGT 1345554 Query 50127 GCTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 ||| | | ||||| || ||||| || ||||| || || ||||| |||| ||| | Sbjct 1345553 GCTTGCTCGAGATCCAGTTCATCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCT 1345494 Query 50186 CTATGGCATTAAA 50198 | || || || || Sbjct 1345493 CGATCGCGTTGAA 1345481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240329620440