Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3071 300 2e-76 >seq3071 Length=929925 Score = 300 bits (332), Expect = 2e-76 Identities = 1203/1885 (64%), Gaps = 30/1885 (2%) Strand=Plus/Plus Query 70790 CCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 ||||||||| || ||||| |||| | |||| ||| || || || |||||||| | Sbjct 832866 CCTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTC 832925 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | ||||| || || | |||| ||||| || || || || |||||| ||| | | Sbjct 832926 CGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGG 832985 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | || || | ||| || || | |||||| || ||||||||||| |||| ||| || | Sbjct 832986 GTTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGG 833045 Query 70970 CCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 71027 ||||||| ||| || ||| ||| |||||||| | ||||| || | ||||| | Sbjct 833046 CCATTTTGATGCAGGT-TTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATG 833104 Query 71028 ATCTTCTGGAAG--GTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 ||| ||| || | | ||| ||||| || || || || | || || Sbjct 833105 TGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTC 833164 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || || || | ||| | | ||||| | || | |||||||| | || || || Sbjct 833165 ATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGACC 833224 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || || || |||| || | || |||| | || ||| |||||||| | || Sbjct 833225 TGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGAT 833284 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 || || || || | ||||| || || || || || ||||| || || | | || Sbjct 833285 TCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGAG 833344 Query 71266 TTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCG 71323 |||| | || ||| | || ||||| || || || | |||| | ||| || || | Sbjct 833345 TTTCGGACTCC--GTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGG 833402 Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCAT 71383 |||| | ||||| || ||| | | || | | Sbjct 833403 ATGGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGACAGCCATCGT 833462 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || ||||| | ||| || || ||||| | |||||| || ||||| | || || || | Sbjct 833463 ACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGT 833522 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 | ||||||||||| || | || || || | ||| |||||| ||| || | || | Sbjct 833523 AGATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGC 833582 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | || || |||||||| || | ||| || || || || ||||| || | ||| | | Sbjct 833583 GCATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCA 833642 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 | || || | || || |||| || || || || || || |||||||| || |||| Sbjct 833643 TGTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGAT 833702 Query 71624 TTCT---GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC-- 71678 || | ||||||| || || || ||||| || || | || ||| | | || Sbjct 833703 TTTTTGTGACTATT--TTAGAG-ACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCG 833759 Query 71679 -TATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 | | ||||||| ||| | || | || |||| || || ||||| | || | | | Sbjct 833760 GTTTGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTC--CTT 833817 Query 71738 CGGCA--TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | | || | | ||||| |||||||| || |||||| ||||| || | || || Sbjct 833818 GGACGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTG 833877 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 || || ||||| ||| || || ||||| || || || |||| || || || | Sbjct 833878 CTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGAC 833937 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT 71915 ||| || || || ||||| ||| | | ||||||| | || |||| | Sbjct 833938 CTGCGACTCGATGATCGCGAACCACAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCC 833997 Query 71916 TTCTCTTTCGTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 ||| | ||||| | ||||| | || |||||||| || ||||||| | | | Sbjct 833998 TTCGTTCTCGTACGTCGTGTACAGCTTC--TCGAACTCCTCACCCCAAGTTTCCGGGAGT 834055 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || ||||| || | ||| ||||||| |||| || | | | | | ||||| ||||| Sbjct 834056 CCGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATG 834115 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || ||||| |||||||| || || || | || | | | |||||| || || Sbjct 834116 AACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCG 834175 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 || || || || | || | ||| | | ||||| ||||||||||||| || || Sbjct 834176 GTGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATC 834235 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || ||||| ||||| || ||||| || | ||| | || ||||| || ||| Sbjct 834236 GCAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAA 834295 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || |||| ||| || | | || || || || || || |||| || || | || Sbjct 834296 ACCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCC 834355 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 | || || || | ||| ||| | | || ||||| || ||| || ||||| || | Sbjct 834356 TTCGCCCGGATGCAGTGCACATTCACA--CCGATTCCACCCGCCGACTTGGAGATCAACG 834413 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 |||| | || | ||| || || || || || |||||||| || |||| | | || | Sbjct 834414 CGCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGA 834473 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || |||| || |||| | || |||| ||| | ||| || || ||||||| Sbjct 834474 AGCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCG 834533 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 |||| | || ||||| || |||||||||||||| || | || || ||| | Sbjct 834534 TAAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGT 834593 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 | || || ||||| || ||||| | ||| ||||| || | || || | |||| || | Sbjct 834594 GAATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTTGA 834653 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 | |||| || ||| || |||| || || || ||||| |||||||| |||||| | Sbjct 834654 TCTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTCCC 834713 Query 72632 GTTCGTAAATAATAACCGAATTGAG 72656 | ||||| || || ||||||| || Sbjct 834714 GGTCGTAGATGATGGCCGAATTAAG 834738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112597719960