Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2724 96.9 4e-15 >seq2724 Length=367895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || | ||| | ||||| || || || || ||||| ||| Sbjct 202580 GCCACCACGCAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGA 202639 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||||| || || || || || |||||||||| ||||| || ||||| Sbjct 202640 CAGAGTACGACCATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGG 202699 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||||| ||| || || Sbjct 202700 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 202759 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||||| ||||| ||||| || ||||| Sbjct 202760 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 202807 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||| || | ||||| || ||||| || || ||||||||||| Sbjct 202352 GCCACCACGCAGACGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGA 202411 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||| |||||||| || || || |||| ||||| |||||||| || || Sbjct 202412 AAGAGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGG 202471 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||| || | || || || Sbjct 202472 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCGAC 202531 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| |||| ||| || ||||| || ||||| Sbjct 202532 CTCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 202579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506994303216720