Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2443 123 2e-23 >seq2443 Length=228914 Score = 123 bits (136), Expect = 2e-23 Identities = 225/326 (69%), Gaps = 19/326 (6%) Strand=Plus/Minus Query 20955 GCCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCTGTTAA 21014 ||||||| |||||||| |||||| || || || |||||| ||| ||| | | Sbjct 221117 GCCGCAGGCCAGCCGGGCGCCCGCATTTCCGGTGGTCTTGCTCAGCTCGTGTCCGCCCAC 221058 Query 21015 GCCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGGACC 21074 ||| || || || |||| | |||||| |||| | | || |||| ||||| ||||| || Sbjct 221057 GCCCAGATCGTCCGGATCGGCGTGCACGACCACGGTGCGGCCCAGGATGCTCAGCGGTCC 220998 Query 21075 AAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCCGCGGA 21134 || ||| |||||| | |||||||| | || ||| ||| || | Sbjct 220997 GCTCAGCGAGATCTGCTTGTCGGTGATGTCGACCTTGGCCA-CGC-------CCCCCGCA 220946 Query 21135 GCGG-----ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGA 21189 ||| || ||||||| ||| ||| |||| || | | ||||| || |||||||| Sbjct 220945 TCGGCCACCACATTGCCCAAATCTCCGGCGTGACGGACGGACGCGTCCGGGGCGCCGTGT 220886 Query 21190 TT-TTG--GTGCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCG 21246 | ||| ||||| ||||||||||| ||||| || ||||| |||||| || ||||| Sbjct 220885 TCCTTGCCGTGCG---GGTTAAAGTGCGGCCCGGCCGAGGTGCACCCGTTGGTGTTGTCG 220829 Query 21247 CCGAACTCGTGAACGTGAAAGCCGTG 21272 || |||||||| | ||| |||||||| Sbjct 220828 CCAAACTCGTGGATGTGGAAGCCGTG 220803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414556778186374