Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2443 122 7e-23 >seq2443 Length=228914 Score = 122 bits (134), Expect = 7e-23 Identities = 220/320 (69%), Gaps = 9/320 (3%) Strand=Plus/Plus Query 22348 CACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCACGTCGGCAGGCGAG 22407 ||||| || ||| | ||||| |||||||||| | ||| |||||||| ||||| || | Sbjct 220803 CACGGCTTCCACATCCACGAGTTTGGCGACAACACCAACGGGTGCACCTCGGCCGGGCCG 220862 Query 22408 CACTTTAACCCTACGCACCG---GCAACATGGCGCGCCTGACGCTGCGGAGCGTCACGTC 22464 |||||||||| ||||| | | |||| ||||| || ||||| | | ||||||| | Sbjct 220863 CACTTTAACC---CGCACGGCAAGGAACACGGCGCCCCGGACGCGTCCGTCCGTCACGCC 220919 Query 22465 GGCGATTTGGGCAACGTGCGCTCCGTCGGCTGCACCGCGCTCACGCCGGTAAACATGAGT 22524 || ||||||||||| ||| ||| | | || | || ||| |||| | Sbjct 220920 GGAGATTTGGGCAATGTGGTGGCCGATGCGGGGGGCGTGGCCA---AGGTCGACATCACC 220976 Query 22525 GATAACGTAATCAGTTTGTACGGCCCGCTGAGCATTCTGGGCCGTAGTTTGGTCGTACAC 22584 || || ||| || ||| ||||||||||| |||||||| | ||||||| ||| Sbjct 220977 GACAAGCAGATCTCGCTGAGCGGACCGCTGAGCATCCTGGGCCGCACCGTGGTCGTGCAC 221036 Query 22585 ACGGACCGTGACGACCTGGGCCTTACCGACCACCCGCTTAGCAAAACGACAGGCAACTCG 22644 | || | ||||| |||||| | || ||| ||| ||||| || || || || || Sbjct 221037 GCCGATCCGGACGATCTGGGCGTGGGCGGACACGAGCTGAGCAAGACCACCGGAAATGCG 221096 Query 22645 GGCGGCCGGTTGGGCTGTGG 22664 |||| |||| ||| ||| || Sbjct 221097 GGCGCCCGGCTGGCCTGCGG 221116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419570984397051