Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3122 143 6e-29 seq3114 100 7e-16 >seq3122 Length=1344033 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || || || | ||| || Sbjct 596487 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGACCATCC 596428 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| ||||| || || | ||||||||| ||||| ||||| || |||||| Sbjct 596427 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCC 596368 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || ||||| | |||||| ||||| ||||| || || || ||| Sbjct 596367 TGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGGGTGATGGTC 596308 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | || || || || |||||||| Sbjct 596307 TTACCAGTCAAAGTCTTGACGAAGATCTGCAT 596276 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| | ||| || ||||| || || ||||| || | || | ||| || Sbjct 595119 AGTACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCCGACAAGGTACGACCATCC 595060 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || |||||||| || || || | ||||||||| ||||| ||||| || |||||| Sbjct 595059 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCC 595000 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| || ||||| | |||||| || || ||||| || || || ||| Sbjct 594999 TGAATCTTGGCTTTAACGTTTTCAATGGTATCAGAGGGCTCGACCTCCAGGGTGATGGTC 594940 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 594939 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 594908 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||||| || || || ||||| || || ||||| || | || | ||| || Sbjct 596031 AGGACCAAATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAGGTACGACCATCC 595972 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||||||||| ||||| ||||| || |||||| Sbjct 595971 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCC 595912 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | |||||| |||||| ||||| || || || ||| Sbjct 595911 TGAATCTTGGCCTTAACGTTCTCGATGGTATCCGAAGGTTCGACCTCCAGGGTGATGGTC 595852 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 595851 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 595820 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||||| |||||| || ||||| || || ||||| || || || | ||| || Sbjct 595347 AGGACCAGATGTAGTGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCC 595288 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || || ||||| || || | | ||||||||| ||||| ||||| || |||||| Sbjct 595287 TCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCC 595228 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | |||||| || || ||||| | || || ||| Sbjct 595227 TGGATCTTGGCCTTAACATTCTCGATGGTATCCGAGGGCTCGACCTCCAAGGTGATGGTC 595168 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || ||||||||||| Sbjct 595167 TTGCCAGTCAAAGTCTTGACGAATATCTGCAT 595136 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| |||| || | ||| || Sbjct 595803 AGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGATAAGGTACGACCATCC 595744 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || || ||||| || || || | ||||||||| || || ||||| || |||||| Sbjct 595743 TCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTTATCC 595684 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || ||||| | |||||| ||||| ||||| || || || ||| Sbjct 595683 TGAATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGGGTGATGGTC 595624 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 595623 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 595592 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || ||||| || | || | ||| || Sbjct 596943 AGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAAGGTACGACCATCC 596884 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||||||||| ||||| ||||| || |||||| Sbjct 596883 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCC 596824 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || ||||| | |||||| ||||| ||||| || || || ||| Sbjct 596823 TGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGGGTGATGGTC 596764 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | || || || || || ||||| Sbjct 596763 TTACCAGTCAAAGTCTTGACGAAGATTTGCAT 596732 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || || || || || || | ||| || || || || |||||||| || Sbjct 598062 TCCTTCTGGATGTTGTAATCCGACAGGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAG 598003 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||||||||| || || ||||| || |||||||||||||| || || || || Sbjct 598002 ATCAGACGCTGTTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTC 597943 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| || || ||||| | || || ||||| || || || || || || Sbjct 597942 TCGATGGTATCCGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCCGTTAGAGTCTTGACG 597883 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 597882 AAGATCTGCAT 597872 >seq3114 Length=1216407 Score = 100 bits (110), Expect = 7e-16 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 238560 CAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTA 238619 ||||||||| ||| |||| ||||| ||| ||||| || ||||| | || ||||| Sbjct 661038 CAGCTCGAGCAGGCCAAAACGCACGACGACCTGTGGAACTCGGCCCAACTGCAGATGGTC 660979 Query 238620 AGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGG 238679 | ||||||||||| | || | || ||||| ||||| || ||||| || |||||| Sbjct 660978 AAGGAGGGCAAAATGCACGGCTTTCTGCGCATGTACTGGGCGAAGAAGATCCTCGAATGG 660919 Query 238680 ACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACT 238738 || | || || |||| || | | || | | || || || ||||| ||| | || Sbjct 660918 ACCAAGTCGCCGGAGGAGGCGC-TCGAAACCGCAATCTACCTCAACGACCGTTACCAGCT 660860 Query 238739 CGACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGG 238778 ||||| ||| ||||| ||||||||||| || ||||||||| Sbjct 660859 GGACGG-ACGTGATCCGAACGGATACGTCGGCTGTATGTGG 660820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151351620482068