Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq3077 86.0 6e-12 >seq3077 Length=956384 Score = 86.0 bits (94), Expect = 6e-12 Identities = 178/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 5236 CGATCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTC 5295 || ||| || |||||||| || | ||||| || || || ||| | | |||||| Sbjct 953570 CGTTCCCGTGGAACCGAACCCTCCCGCACCGCGTTCCGTTTCCGTCAAACTGGCAACCTC 953629 Query 5296 TTGAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTT 5355 || | | |||| | || || ||||| || | ||| || |||| || || Sbjct 953630 TTCCAGCTCGGGGTAGAAGATCCGCTCGCAGATAAACTGCGCAATCCGATCGCCGCGGGC 953689 Query 5356 AACCTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAG 5413 |||| || ||| ||| | ||| ||| ||||| |||||||| | ||||| || ||| Sbjct 953690 CACCTTGAACTCGTTGT--CGGAATGGTTGAACAGGACCACCCCCAGGTTGCCACGATAG 953747 Query 5414 TCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGT 5473 || ||||| | ||||| || || || |||||||||| ||||| || | || || || Sbjct 953748 TCCTCGTCCACGACGCCGGCACCGACATCGATAAAGTTCTTGACGGCCAAACCCGAGCGG 953807 Query 5474 GGTGCTATGCGTCCGTAGCAACC 5496 || || | || ||||||||||| Sbjct 953808 GGCGCCACCCGACCGTAGCAACC 953830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447732652293520