Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3077 179 3e-40 >seq3077 Length=956384 Score = 179 bits (198), Expect = 3e-40 Identities = 247/341 (72%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||||| ||||| || || || || | |||||| || || | || ||||||||| Sbjct 953574 CCCGTGGAACCGAACCCTCCCGCACCGCGTTCCGTTTCCGTCAAACTGGCAACCTCTTCC 953633 Query 5564 ACATCGGGGAACGCAGCGC-GCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 | |||||| | | || | |||||||||| | |||||| || || ||||| || Sbjct 953634 AGCTCGGGGTA-GAAGATCCGCTCGCAGATAAACTGCGCAATCCGATCGCCGCGGGCCAC 953692 Query 5623 CTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 || ||| ||||||| | ||| ||||||||| ||||| |||| |||||| || ||||| Sbjct 953693 CTTGAACTCGTTGT--CGGAATGGTTGAACAGGACCACCCCCAGGTTGCCACGATAGTCC 953750 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 |||| | ||||| || || || ||||| |||| |||||| |||| || |||||||| Sbjct 953751 TCGTCCACGACGCCGGCACCGACATCGATAAAGTTCTTGACGGCCAAACCCGAGCGGGGC 953810 Query 5741 GCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGC 5800 ||||| || |||||||| || || || ||||| | ||| | ||| || | |||| || Sbjct 953811 GCCACCCGACCGTAGCAACCCTCCGGCAGCTGAACCTGGATGTCGGTCATAACCAGCTGC 953870 Query 5801 CGACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTGCAGAG 5841 |||| || || ||| || | ||| | ||||||| ||| Sbjct 953871 TTGCCGCGGGCCGGAACGGTGTACTCGTAGGCGCTGCGGAG 953911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430037779875752