Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3133 105 6e-18 seq3122 98.7 8e-16 seq2724 93.3 4e-14 seq3140 89.7 4e-13 >seq3133 Length=1421877 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || ||| |||||| || |||||||| || | || || || | |||| Sbjct 291903 CACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCATCCT 291845 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | ||||||||||||| || | | ||||||||| Sbjct 291844 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCT 291785 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | | || ||||||| | ||| ||||| || ||||| | Sbjct 291784 GGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGCTCGACCTCGAGAGTGATGGTCT 291725 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||| ||||| ||||| || || ||||||||| || Sbjct 291724 TACCCGTGAGGGTTTTGACGAAGATCTGCATCCTG 291690 >seq3122 Length=1344033 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | || ||||| |||||||||||||| || |||||||| || | Sbjct 595135 ACCACCGCGCAGACGCAGTACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCCGA 595076 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | |||||||||||||| || || | || | |||||| ||||| || Sbjct 595075 CAAGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAGG 595016 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACT 48674 | | ||||| ||| ||| || |||| | ||| | |||||||| | | || Sbjct 595015 GATTCCCTCCTTATCCTGAATCTT-GGCTTTA---ACGTTTTCAATGGTATCAGAGGGCT 594960 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 | ||| | || ||||| || || || ||||| ||||| || ||||||||||| Sbjct 594959 CGACCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATCGT 594905 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| | || || ||||| |||||||||||||| || ||||||||||| | Sbjct 598099 ACCTCCCCTCAATCGCAATACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAATCCGA 598040 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| || || | || | |||||| ||||| || Sbjct 598039 CAGGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGGGG 597980 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| ||| ||| || ||| | | | |||||||| | | ||| Sbjct 597979 GATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGAC 597920 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || ||||| || || || |||||||| Sbjct 597919 CTCCAAGGTGATGGTCTTTCCCGTTAGAGTCTTGACGAAGATCTGCAT 597872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||||| | | || ||||| || ||| |||||| || |||||||| || | Sbjct 596047 ACCTCCGCGCAGACGCAGGACCAAATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 595988 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||||||||||||||| || | || | |||||| ||||| || Sbjct 595987 CAAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGG 595928 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| ||| ||| || ||| | | | |||||||| | || || Sbjct 595927 GATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCCGAAGGTTCGAC 595868 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || ||||| || || || |||||||| Sbjct 595867 CTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 595820 >seq2724 Length=367895 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| | || || || ||||||||| |||||| ||| || Sbjct 202160 CTCCTTCTGGATGTTGTAATCCG-AAAGGGTGCGGCCGTCCTCCAACTGCTTTCCGGCGA 202218 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| || | | ||||||||| || || ||||| | Sbjct 202219 AGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACAT 202278 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| || | | ||| ||||| || ||||| |||||||| || || |||| Sbjct 202279 TCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCA 202338 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 202339 CGAAGATCTGCAT 202351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||| | || || || ||||||||| |||||| ||| || Sbjct 203072 CTCCTTCTGGATGTTGTAATCCG-AAAGGGTGCGGCCGTCCTCCAACTGCTTTCCGGCGA 203130 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| | ||||||||| || ||| | | ||||||||| || || ||||| | Sbjct 203131 AAATCAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACAT 203190 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| || | | ||| ||||| || ||||| |||||||| | ||| || | Sbjct 203191 TCTCGATGGTGTCCGACGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAAAGTCTTGA 203250 Query 48714 CAAAAATCTGCATCGTG 48730 | || || |||||| || Sbjct 203251 CGAAGATTTGCATCCTG 203267 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | || || ||||| || ||||| || ||||||||||| | | Sbjct 201897 CCTCCGCGGAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAC 201956 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| |||||||| ||| || | || | |||||||||||| || Sbjct 201957 AAGGTACGACCATCCTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 202016 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||||| | | | || ||||||| | || | Sbjct 202017 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGTTCGACC 202076 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| |||||||| || || ||||| || |||||||| Sbjct 202077 TCCAGAGTAATGGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 202123 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | ||| || ||||| || |||||| || ||||||||||| | | Sbjct 202809 CCTCCGCGGAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 202868 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || ||||||||| |||||| ||| || | || | ||||||||| || || Sbjct 202869 AAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 202928 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||| || || ||||| | | ||||| || | | ||| | Sbjct 202929 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACC 202988 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| || || ||||| || |||||||| Sbjct 202989 TCCAAAGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 203035 >seq3140 Length=1521851 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | || |||||| |||||| || |||||||| || | Sbjct 429096 ACCACCGCGCAGACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 429155 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || |||||||||||||||| ||| || | || |||||||||||||| ||| Sbjct 429156 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGG 429215 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || |||| | | | || || || | | ||| Sbjct 429216 GATTCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATCGTGTCCGATGGCTCGAC 429275 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || || || || || || || || |||||||| ||| Sbjct 429276 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTG 429327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421234920089171