Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3144 102 4e-17 seq3165 95.1 6e-15 seq3025 95.1 6e-15 seq3010 95.1 6e-15 seq2991 95.1 6e-15 seq2870 95.1 6e-15 seq2529 95.1 6e-15 seq2763 91.5 8e-14 seq3168 89.7 3e-13 seq3164 89.7 3e-13 >seq3144 Length=1692035 Score = 102 bits (112), Expect = 4e-17 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| | ||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 975667 AAAAAATCCA-TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 975609 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538 ||||| |||| |||||||| ||||| |||| ||| Sbjct 975608 GCTCTAACCAGCTGAGCTATGGGGCCATCGATGAT 975574 >seq3165 Length=2258389 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1010229 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1010170 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| |||||| Sbjct 1010169 CTGAGCTATGGGGCCG 1010154 Score = 95.1 bits (104), Expect = 6e-15 Identities = 79/95 (83%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| |||||| || || |||| | || |||||||||| |||||||||||||||||| Sbjct 1072816 TTAAAAAAAAA-CATATATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAG 1072874 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||||| |||| |||||||| ||||| || Sbjct 1072875 CACGACGCTCTAACCAGCTGAGCTATGGGGCCATC 1072909 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||| | || |||||||||| ||||||||||||||||||||||||| Sbjct 1073218 AAAAA--AACTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 1073275 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||| ||||| Sbjct 1073276 CTCTAACCAACTGAGCTATGGGGCC 1073300 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || ||| ||||| ||| | || |||||||||| ||||||||||||||||||||||| Sbjct 1070499 AAGAATAAAATTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 1070440 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||| ||||| Sbjct 1070439 CGCTCTAACCAACTGAGCTATGGGGCC 1070413 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||| | || |||||||||| ||||||||||||||||||||||||||||| || Sbjct 1070892 AAAGTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 1070833 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||| ||||| Sbjct 1070832 CAACTGAGCTATGGGGCC 1070815 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 973224 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 973165 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 973164 TGAGCTATGGGGCC 973151 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 974207 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 974148 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 974147 TGAGCTATGGGGCC 974134 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1068791 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1068732 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 1068731 TGAGCTATGGGGCC 1068718 >seq3025 Length=793019 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 534836 AAAAAGTCAC--TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 534893 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||||||||||||| ||||||| Sbjct 534894 GCTCTAACCAACTGAGCTATGGGGCCGT 534921 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 497621 AAAAAAGTAACCTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 497562 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||| |||||||| ||||||| Sbjct 497561 GCTCTAACCAGCTGAGCTATGGGGCCGT 497534 Score = 93.3 bits (102), Expect = 2e-14 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||| | || |||||||||| ||||||||||||||||||||||||| Sbjct 501907 AAAATATAATCTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 501848 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||| ||||| Sbjct 501847 CTCTAACCAACTGAGCTATGGGGCC 501823 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 498519 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 498460 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 498459 TGAGCTATGGGGCC 498446 >seq3010 Length=760981 Score = 95.1 bits (104), Expect = 6e-15 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11446 AAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| ||||| ||| | || |||||||||| ||||||||||||||||||||||| Sbjct 215161 AAAATAAAATTCTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 215220 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||| ||||| Sbjct 215221 CGCTCTAACCAACTGAGCTATGGGGCC 215247 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 223271 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 223330 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 223331 CTGAGCTATGGGGCC 223345 >seq2991 Length=748062 Score = 95.1 bits (104), Expect = 6e-15 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| | | || ||| ||||||| |||| | || |||||||||| ||||||||| Sbjct 353197 AAAAAAAAAAATAAAAAAAAATAGGTATGGCTCCAGAGAGGATCGAACTCACGACCTTCG 353138 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||| ||||| Sbjct 353137 CGTTATTAGCACGACGCTCTAACCAACTGAGCTATGGGGCC 353097 >seq2870 Length=499404 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | ||||| | || |||||||||| ||||||||||||||||||||| Sbjct 109723 AAAAAAAAAAGAGCTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCAC 109664 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||| ||||| Sbjct 109663 GACGCTCTAACCAACTGAGCTATGGGGCC 109635 >seq2529 Length=267771 Score = 95.1 bits (104), Expect = 6e-15 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 1975 AAAAAAGAATACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 2034 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 ||||| |||| |||||||| ||||| |||| || Sbjct 2035 GCTCTAACCAGCTGAGCTATGGGGCCTTCGATGA 2068 >seq2763 Length=403712 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 369546 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 369605 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 369606 TGAGCTATGGGGCC 369619 >seq3168 Length=2511003 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | | |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 373801 AAAAAGTTATACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 373860 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||| ||||| Sbjct 373861 GCTCTAACCAGCTGAGCTATGGGGCC 373886 >seq3164 Length=2108026 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/89 (82%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||| | || |||||||| | ||||||||||||||||||||| Sbjct 1164166 AATAAAAAA----AATGGCTCCAGAGAGGATCGACCTCACGACCTTCGCGTTATTAGCAC 1164111 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||| ||||| Sbjct 1164110 GACGCTCTAACCAACTGAGCTATGGGGCC 1164082 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481094263996