Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3071 345 5e-90 seq3141 91.5 2e-13 >seq3071 Length=929925 Score = 345 bits (382), Expect = 5e-90 Identities = 1217/1887 (64%), Gaps = 34/1887 (2%) Strand=Plus/Plus Query 61984 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 ||||||||| ||||| || |||| | |||||||| || || || |||||||||| Sbjct 832866 CCTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTC 832925 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | ||||| || || | |||| ||||| || || || || |||||| || | | Sbjct 832926 CGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGG 832985 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 | || || | ||||| || | || || || ||||||||||| |||| ||| || | Sbjct 832986 GTTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGG 833045 Query 62164 CCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 62221 ||||||| ||| || ||| ||| |||||||| | ||||| || | ||||| | Sbjct 833046 CCATTTTGATGCAGGT-TTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATG 833104 Query 62222 ATCTTCTGGAAG--GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62279 ||| ||| || | | ||| ||||| || || || || | ||||| Sbjct 833105 TGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTC 833164 Query 62280 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62339 || || || | ||| | | ||||| | || | |||||||| | || || || Sbjct 833165 ATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGACC 833224 Query 62340 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62399 || || || || |||| || | ||| |||| | || ||| |||||||| | || Sbjct 833225 TGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGAT 833284 Query 62400 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62459 || || || || | ||||| || || || || || ||||| || || | | | Sbjct 833285 TCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGAG 833344 Query 62460 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 |||| | |||| | |||||| || || || || |||| | ||| || || || Sbjct 833345 TTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGGAT 833404 Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62578 || | || || || || || || | | || | || | || Sbjct 833405 GGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGAC-AGCCATCGTA 833463 Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638 || ||||| | ||| |||||||| || | |||||| || ||||| | |||||||| || Sbjct 833464 CGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGTA 833523 Query 62639 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698 |||||||||||||| | || || || | ||| |||||| ||| || | || | Sbjct 833524 GATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGCG 833583 Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758 | || || |||||||| || | ||| || ||||| || ||||| || | || | | | Sbjct 833584 CATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCAT 833643 Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818 || ||| | || || |||| || || || || || || |||||||| || ||||| Sbjct 833644 GTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGATT 833703 Query 62819 TCT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC--- 62872 | | ||| ||| || || || ||||| || || | || ||| | | || Sbjct 833704 TTTTGTGACTATT--TTAGAG-ACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGG 833760 Query 62873 TATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCA 62930 | | ||||||||||| | || | || |||| || || ||||| | || | | | | Sbjct 833761 TTTGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGA 833820 Query 62931 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 62990 || || | | || || |||||||| || |||||| || || || | || || Sbjct 833821 --CGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGC 833878 Query 62991 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050 || || ||||| ||| || || ||||| || || ||| | || || || || | | Sbjct 833879 TGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACC 833938 Query 63051 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTT 63110 || || || || ||||| ||| | | ||||||| | || |||| | | | Sbjct 833939 TGCGACTCGATGATCGCGAACCACAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCCT 833998 Query 63111 TCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---A 63165 || | ||||| | ||||| | || |||||||| || |||||| | ||| | Sbjct 833999 TCGTTCTCGTACGTCGTGTACAGCTTC--TCGAACTCCTCACCCCAAG---TTTCCGGGA 834053 Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63225 ||| ||||| || | ||| ||||||| |||| || ||| | ||| ||||| |||| Sbjct 834054 GTCCGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCA 834113 Query 63226 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63285 | || ||||| |||||||| || || || | || | | | ||||| || | Sbjct 834114 TGAACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGC 834173 Query 63286 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345 | || || || || | || | ||| | | ||||| ||||||||||||| || | Sbjct 834174 CGGTGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGA 834233 Query 63346 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405 | || | | || ||||| ||||| || ||||| || | ||| | || ||||| || | Sbjct 834234 TCGCAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGT 834293 Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465 |||| |||| ||| || | | ||||| || || || || || |||| || || | | Sbjct 834294 AAACCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGC 834353 Query 63466 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 | | || || || | | | ||| | | || ||||| || ||| || ||||| || Sbjct 834354 CCTTCGCCCGGATGCAGTGCACATTCACA--CCGATTCCACCCGCCGACTTGGAGATCAA 834411 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 ||||| | || | |||||| || || || || || ||||| ||| |||| | | || Sbjct 834412 CGCGCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAG 834471 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 || || |||| || |||| | || |||| ||| | ||| || || ||||| Sbjct 834472 GAAGCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTG 834531 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 |||||| | || || || || |||||||||||||| || | ||| || ||| Sbjct 834532 CGTAAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCC 834591 Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763 ||||| || || || || ||||| | ||||||||| || | || || | |||| || Sbjct 834592 GTGAATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTT 834651 Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 || |||| || ||| || |||| || || || ||||| |||||||| |||||| Sbjct 834652 GATCTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTC 834711 Query 63824 TCGTTCGTAAATAATAACCGAGTTGAG 63850 || ||||| || || |||| || || Sbjct 834712 CCGGTCGTAGATGATGGCCGAATTAAG 834738 >seq3141 Length=1574671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 ||||| | ||| || || ||| ||| || |||||||| | || || ||||| || Sbjct 1345731 AACATGAGACAGGCAAAGTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAG 1345672 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || |||||||| ||||||||||| || ||||| || ||||| ||||| || Sbjct 1345671 AAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCG 1345612 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GC 33472 |||||||| || || || || || || || | | | ||| ||| | ||| || Sbjct 1345611 CTGAAGAAGATGCCCTCGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGC 1345552 Query 33473 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | | | ||||| || ||||| || ||||| || || ||||| |||| ||| || Sbjct 1345551 TTGCTCGAGATCCAGTTCATCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCG 1345492 Query 33532 ATGGCATTAAA 33542 || || || || Sbjct 1345491 ATCGCGTTGAA 1345481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922507930360