Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3114 140 3e-28 seq3141 87.8 2e-12 seq3071 84.2 2e-11 >seq3114 Length=1216407 Score = 140 bits (154), Expect = 3e-28 Identities = 212/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 ||||||| || || || ||||| | || || | ||| | ||| ||||| ||||| | Sbjct 661022 AAACGCACGACGACCTGTGGAACTCGGCCCAACTGCAGATGGTCAAGGAGGGCAAAATGC 660963 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 |||| | || |||||||||||||| || ||||| ||||| ||||| | | || ||| Sbjct 660962 ACGGCTTTCTGCGCATGTACTGGGCGAAGAAGATCCTCGAATGGACCAAGTCGCCGGAGG 660903 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 |||||||||| | || || || ||||| | ||| || ||||| || ||||| | Sbjct 660902 AGGCGCTCGAAACCGCAATCTACCTCAACGACCGTTACCAGCTGGACGGACGTGATCCGA 660843 Query 71850 ACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAAC 71909 |||| || ||||| || ||||||||||| ||| | |||||| ||| || | Sbjct 660842 ACGGATACGTCGGCTGTATGTGGAGCATCGCCGGCATCCACGATCAGGGCTGGCGCGAGC 660783 Query 71910 GTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATG 71969 | |||| || || || |||||||| ||||| | || ||| | |||||||| ||| Sbjct 660782 GGGAAGTTTTCGGCAAGATTCGCTACATGAACTACGAGGGCTGCAAGCGCAAGTTTGATG 660723 Query 71970 TG 71971 || Sbjct 660722 TG 660721 >seq3141 Length=1574671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 308/472 (65%), Gaps = 23/472 (5%) Strand=Plus/Minus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 ||||||||| || || || || || || ||||| ||||| || || ||| | ||| Sbjct 1346008 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTTCCCTCGAGCGAGATGAACTCCAT 1345949 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 || ||| || || |||||| | ||| |||| ||||| ||||| || || || Sbjct 1345948 GAAGCTGAACGGGTTCTTGGTGTTGTAGATCTTTTCGTTGCCCAGCTCGAGCAGGAGGCG 1345889 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACAT-GGATTGCGAATTCATGCCCAACATAGCGA 119823 ||| || |||||||||||||| | |||| | | || | |||||||| | || ||| Sbjct 1345888 ATCCGCGACAAACTCGATGTACTGCGACATCAGCTCGC-AGTTCATGCCGAGCAGGTCGA 1345830 Query 119824 CCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACATACTCA 119883 | || | || || || | ||| |||| || ||| |||| ||||| | || | Sbjct 1345829 CGGGCAGGGCTTTCGTGAGGAACTCCTGCTCGATGACGACGGCTTCGCGGATGATTTCGA 1345770 Query 119884 ACAC-CTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTAT-AGACA 119941 ||| | | | |||||| || ||| ||| | || | | || ||||| Sbjct 1345769 GCACGCGTTCT-TTGGAGGGC--------TTCTGGA--CCAGGTAGCGGAACATGAGACA 1345721 Query 119942 AGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCC 120001 |||||||||||||| ||||| ||||| | || || || ||||| | | |||| ||| Sbjct 1345720 GGCAAAGTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTCAGGCC 1345661 Query 120002 GGGTA-GAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACCAGaaa 120060 ||| | ||| || ||| |||| || |||| | || || || || | Sbjct 1345660 GGGCATGAG-GCCACGCTTC------TTGAGCCAGAAGATGGACGCGAAGCTGCCGCTGA 1345608 Query 120061 aaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGTGGC 120112 | |||| ||| |||||| || |||||||||| ||| ||| | || |||| Sbjct 1345607 AGAAGATGCCCTCGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGC 1345556 >seq3071 Length=929925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 394/618 (64%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 147443 GACGAGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATT 147502 || |||||| || ||||| || || ||||||| ||||| || | || ||| | || Sbjct 833203 GAGGAGATGGTGGTTGACGACCTGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTT 833262 Query 147503 ACTAGTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGG 147562 || |||| ||||| || |||||||| || || || || || || | || || || Sbjct 833263 GGAGGTGTACGGTTCGAAGGATTCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGG 833322 Query 147563 CATGTAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTC 147622 ||| || | | | || || || | |||||| | || |||| | ||| || Sbjct 833323 CATTGGGGCGAGGAGAAGGGAGTTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGG 833382 Query 147623 GTCCCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCC 147682 | |||||| ||| || || ||| || | ||||||| || |||| | | || Sbjct 833383 GGCCCAGTCCCACAGGTCG---GATGGGGCCTTGTTCCACATGTCGTACTGCAGGATGCC 833439 Query 147683 ACAACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGAT 147742 || | || | |||||||| | ||||| ||||||| | | || | ||| | Sbjct 833440 CTTGCTAACCGGACAGCCATCGTACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTC-AC 833498 Query 147743 ACTTTGACTT-AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAG 147801 | ||| || || ||||| || || || ||||| | || | | || | | | | Sbjct 833499 AGCTTGCCTCGAGGGCACCGTAGTAGATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGG 833558 Query 147802 CCTCTTGGCTGTCGTAGGGCATATCCAAAATGGCGAACGTATCCGCAAGTCCTTGAATAC 147861 | || | ||| ||||| || | || | | ||||| || || | ||| || | || Sbjct 833559 CTTCCTCGCTCTCGTACGGGAAGCGCATCAGGATGAACGCGTCGGCCATTCCCTGGACAC 833618 Query 147862 CGATACCGATGGGTCGGTGTCTGAAATTCGAT-GCTTGAGCGCTAGCCAAC-GGATAAAA 147919 |||| ||||| || ||||| | | || || ||||| | | | ||| || || | Sbjct 833619 CGATTCCGATCGGGCGGTGACGCATGTTGGAGCGCTTGGCCTCCGG--AACTGGGTAGTA 833676 Query 147920 ATTCAAGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGA 147979 || | |||||||||||| || ||||| || || || | | |||| || | | |||| Sbjct 833677 GTTGATGTCGATAATTTTGTTCAGATTTTTTGTGACTATTTTAGAGACTTCCTTGAGCTT 833736 Query 147980 CTTAAAGTCGAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAA 148039 || ||||| | || | |||| | |||| | || || || ||||||||||| Sbjct 833737 CTGGAAGTCATACGACTTGTCCGGTTT---GACAAACATGTTGACCGCGATCGAGGCCAA 833793 Query 148040 GTTACACACGGCCGTTTC 148057 ||| |||||||| |||| Sbjct 833794 GTTGCACACGGCAATTTC 833811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478643427019120