Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3071 269 7e-67 >seq3071 Length=929925 Score = 269 bits (298), Expect = 7e-67 Identities = 699/1051 (67%), Gaps = 21/1051 (2%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || || |||||||| ||| | ||||| || || |||| || || | | ||| || Sbjct 834639 GTGGAGCGTCCGCAGCACATGCTGATGCGGGTGGCGGTTGGCATTCACGGGCTGGACATT 834580 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCC 363563 || || || ||||| || || || || || | || ||| || ||||||||| |||| Sbjct 834579 GACGCGGCCATTGAGACGTACAACCTGCTGTCGGAGCG-GTACTTTACGCACGCCTCGCC 834521 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || |||| || | || || ||| ||| |||| || ||||| || | | || Sbjct 834520 GACCATGTTTGCGGCGGCCACGCGGCGTCCGCAGCTGTCGTCGTGCTTCCTGTTGACGAT 834461 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 || |||||| ||||| || || | ||||| || ||| | || || | || ||||| Sbjct 834460 GAGCGACGATAGTATCGACGGAATTTACGACACGCTGAAGCAGTGCGCGTTGATCTCCAA 834401 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCG 363743 | || || ||||| ||||| | ||| | || || || || |||||| Sbjct 834400 GTCGGCGGGTGGAATCGGTGTGAATGTGCACTGCATCCGGGCGAAGGGCACGTACATTGC 834341 Query 363744 CGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||| || | ||||| |||||| |||||||| || ||||| | || | |||| || | Sbjct 834340 CGGAACGAACGGGAT-CTCGAACGGGCTGGTGCCGATGCTGAGGGTTTACAACAACACGG 834282 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || ||||||| |||||||| || ||||| ||||||||||| || ||||| || | Sbjct 834281 CGCGGTACGTTGACCAGGGCGGCAACAAGCGGCCCGGGGCGTTTGCGATCTATCTGGAAC 834222 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || | ||||| ||||||||| | || | ||||||||| || || ||||| Sbjct 834221 CGTGGCACGGAGATATCTTTGAGTTTTTGGACTTGAAGAAAAACACCGGCAAGGAGGAGG 834162 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 | || || || || ||||||| || || ||| || | || | || |||||||| || | Sbjct 834161 TCCGCGCTCGGGACATGTTCTACGCGCTGTGGATTCCGGATCTGTTCATGAAGCGAGTCG 834102 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 |||| || | |||| || | ||||| ||||| ||||| || || | || | Sbjct 834101 AGGCTAACGAGGACTGGTGTCTGATGTGCCCGCACGACTGTCCCGGACTCCCGGAAACTT 834042 Query 364043 GGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGA-ATCGGAGG--GAAAGGCTCG 364097 ||||||| || | | ||| || ||| | ||| || | || ||| | | ||| Sbjct 834041 GGGGTGAGGAGTTCGAGAAGCTGTACACG--ACGTACGAGAACGAAGGACGCTACATTCG 833984 Query 364098 TAA-GACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 ||| | ||| || ||| | || ||||| || ||||| || |||||| | ||||| | Sbjct 833983 TAAGGTCAA----GGCTCAGGATCTGTGGTTCGCGATCATCGAGTCGCAGGTCGAGACGG 833928 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 || || || ||| ||||||| || | |||||||| ||| |||||||||| || | | Sbjct 833927 GAGTGCCGTACATGCTGTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAACATCG 833868 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || || || ||||| || || || || | || ||| | | ||||| | Sbjct 833867 GCACCATAAAGTGTTCGAACCTTTGCACGGAAATCGTGGAGTACTCGTCCAAGGACGAAA 833808 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA---GATGGTACTT 364333 |||||| || ||| | || ||||||||| | |||||| ||| || | | Sbjct 833807 TTGCCGTGTGCAACTTGGCCTCGATCGCGGTCAACATGTTTGTCAAACCGGACAAGTCGT 833748 Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCAT-GCTACTTGCAATCTCGACAAGGTT 364392 |||| |||| | || | || || ||| || | || ||||| |||| || Sbjct 833747 ATGACTTCCAGAAGCTCAAGGAAGT-CTCTAAAATAGTCACAAAAAATCTGAACAAAATT 833689 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCG 364452 ||||||| || || || ||| |||| || ||| |||| || || |||||||| |||||| Sbjct 833688 ATCGACATCAACTACTACCCAGTTCCGGAGGCCAAGCGCTCCAACATGCGTCACCGCCCG 833629 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACG 364483 || || | ||||| ||||| | || |||| Sbjct 833628 ATCGGAATCGGTGTCCAGGGAATGGCCGACG 833598 Score = 134 bits (148), Expect = 4e-26 Identities = 281/413 (68%), Gaps = 12/413 (3%) Strand=Plus/Minus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 || |||||||| | || || ||||| || || || || || || |||||||| ||| Sbjct 833349 CGAAACTCCCTTCTCCTCGCCCCAATGCCAACCGCGTCCACCGCGCAAATCCTCGGCAAC 833290 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 ||||| | ||||||||||| || ||| | || || || || || ||||| || Sbjct 833289 AACGAATCCTTCGAACCGTACACCTCCAACGTCTACAACCGGCGCGTGCTGTCCGGCGAG 833230 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || | ||| || || | | || |||| || || |||| | || |||||||| ||| Sbjct 833229 TTCCAGGTCGTCAACCACCATCTCCTCAAAGACCTCACCGAACTCGAGCTGTGGGACGAC 833170 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC- 364970 |||||||||| | ||||||||| || || || | ||| ||| || | || ||| Sbjct 833169 GACATGAAGAACAAAATCATCGCCAGCAACGGCTCCATCCAGCACA-TCGACGAAATCCC 833111 Query 364971 --AGAAGATCTG-AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCAT 365027 || | ||| | ||| | |||||||| || |||||||| ||| | ||| ||| Sbjct 833110 CAAGCACATCCGCGAGC---TCTACAAAACGGTGTGGGAAATCTCCGTCAAAACCTGCAT 833054 Query 365028 TGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 | ||||| ||||| || || || || ||| ||| ||||||||| ||| || || Sbjct 833053 CAAAATGGCCGCCGACCGGGGCGCCTTCATCGACCAGTCCCAGTCGTTCAAC--ATCCAC 832996 Query 365088 GACTC--AGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | | | | || | || || ||| || || || || || |||||||| ||||| Sbjct 832995 GTCGCGGAACCCAACTACGGCAAACTCACCTCGATCCACTTCTACGGCTGGAA 832943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303300646779722