Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2443 104 2e-17 >seq2443 Length=228914 Score = 104 bits (114), Expect = 2e-17 Identities = 223/328 (68%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 112210 CAATAATACCGCAAGCCAGCCGACCACCCGAGTTGCCCGTAATCTTGCTAAGCGGGTTAT 112269 |||| | ||||| |||||||| | |||| || || || ||||||| ||| || Sbjct 221124 CAATCACGCCGCAGGCCAGCCGGGCGCCCGCATTTCCGGTGGTCTTGCTCAGCTCGTGTC 221065 Query 112270 CGGTGAGACCAAGGTCGTCGCGGTCCGTGTGCACCACCAAGCTGCGACCCAAAATGCTCA 112329 || | || || ||||| | || | |||||| |||| | |||| |||| ||||||| Sbjct 221064 CGCCCACGCCCAGATCGTCCGGATCGGCGTGCACGACCACGGTGCGGCCCAGGATGCTCA 221005 Query 112330 ACGGCCCAAATAAACTTATCACGTTGTCGGTCATTTCTA--TTGGCGTCAGCGCGGTACA 112387 ||| || | ||| |||||||| || || | ||||| | || | || Sbjct 221004 GCGGTCCGCTCAGCGAGATCTGCTTGTCGGTGATGTCGACCTTGGCCAC-GCCCCCCGCA 220946 Query 112388 GCCGACAGAGCGCACGTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCC 112447 | | || ||| ||||| | || ||| |||| || ||| ||||| || ||||| Sbjct 220945 TCGGCCAC----CACATTGCCCAAATCTCCGGCGTGACGGACGGACGCGTCCGGGGCGCC 220890 Query 112448 ATGGTCTTGGTTCGTG-GGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGT 112506 || || | | |||| |||||||| ||| || ||||| |||||||||||| | ||| Sbjct 220889 GTGTTCCTTGC-CGTGCGGGTTAAAGTGCGGCCCGGCCGAGGTGCACCCGTTGGTGTTGT 220831 Query 112507 CGCCAAACTCGTGCACGTGAAAACCGTG 112534 ||||||||||||| | ||| || ||||| Sbjct 220830 CGCCAAACTCGTGGATGTGGAAGCCGTG 220803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425327561916520