Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3122 102 7e-17 seq2724 95.1 1e-14 seq3133 87.8 1e-12 >seq3122 Length=1344033 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | |||||||| ||| || |||||||||||||| ||||||||||| | Sbjct 596274 CCTCCGCGCAGACGCAGTACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAA 596215 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||| || || || || | || || |||||||| || ||| Sbjct 596214 AGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 596155 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || ||| || | | | || || |||||| Sbjct 596154 ATTCCCTCCTTATCTTGGATCTTGGC--CTTAACGTTCTCGATGGTATCCGAGGGCTCGA 596097 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || ||||| || |||||||| Sbjct 596096 CCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||||||| || |||| || | ||||||||||| | Sbjct 593309 CCACCCCGCAGGCGCAGCACCAGATGCAGCGTCGATCCCTTCTGGACGTTGTAGTCGGAC 593250 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| || || || Sbjct 593249 AAGGCGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCTGGGGGG 593190 Query 16829 ACGCCCTCTTTGTCGGCAAT-TTGCTGCTTCA---CCTGGCCCACAGTGTCGCCGGGCTC 16884 | || || ||||| | || |||| ||| | |||| | |||||| ||||||| Sbjct 593189 ATACCTTCCTTGTCCTCGATCTTGC-CCTTGATGTTCTGG---ATCGTGTCGACGGGCTC 593134 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| |||||||| ||||| || || || || || |||||||| Sbjct 593133 GACGTCCAGGGTAATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 593083 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||||| |||||| ||| |||||| || ||||||||||| | | Sbjct 595134 CCACCGCGCAGACGCAGTACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 595075 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || || || || | || || |||||||| || ||| Sbjct 595074 AAGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 595015 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || ||| || || | | | || || |||||| Sbjct 595014 ATTCCCTCCTTATCCTGAATCTTGGCT--TTAACGTTTTCAATGGTATCAGAGGGCTCGA 594957 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || || || |||||||| Sbjct 594956 CCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 594908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| ||| || || |||||||| || ||||||||||| | | Sbjct 595590 CCTCCGCGCAGACGCAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 595531 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || || || || |||| || |||||||| || || Sbjct 595530 AAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATCAGACGCTGTTGATCTGGGGGA 595471 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || ||| || | | | || || |||||| Sbjct 595470 ATTCCCTCCTTATCTTGGATCTTGGC--CTTAACGTTCTCGATGGTATCCGAGGGCTCGA 595413 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| ||||| |||| || ||||| || |||||||| Sbjct 595412 CCTCCAGGGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 595364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| ||||| | ||| |||| ||| || || |||||||| || ||||||||||| | | Sbjct 597642 CCTCCGCGTAGACGCAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 597583 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || || || || | || || |||||||| || ||| Sbjct 597582 AAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 597523 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || ||| || | | | || || |||||| Sbjct 597522 ATTCCCTCCTTATCCTGGATCTTGGC--CTTAACGTTTTCAATGGTATCCGAGGGCTCGA 597465 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| ||||| |||| || ||||| || |||||||| Sbjct 597464 CCTCGAGGGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 597416 >seq2724 Length=367895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || || ||||| Sbjct 201684 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCC 201743 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| ||||| ||| | ||| || ||||| Sbjct 201744 TCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCC 201803 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| |||||| |||| |||||||| Sbjct 201804 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCCGAGGGCTCAACCTCCAAGGTGATGG 201861 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || |||||||| || || ||||| ||||||||| Sbjct 201862 TCTTACCGGTCAGGGTCTTCACAAAGATCTGCATT 201896 >seq3133 Length=1421877 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||||| ||||||||||| || ||||||||||| | Sbjct 291920 CCACCACGCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 291861 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || ||||| || | || || ||||| || ||| || Sbjct 291860 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGG 291801 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| ||||| Sbjct 291800 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCGATCGTATCGGACGGCTCGA 291743 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || |||||||| || |||||||| Sbjct 291742 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 291694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405072344741290