Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3071 324 2e-83 seq3141 82.4 1e-10 >seq3071 Length=929925 Score = 324 bits (358), Expect = 2e-83 Identities = 1212/1887 (64%), Gaps = 34/1887 (2%) Strand=Plus/Plus Query 61839 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 ||||||||| ||||| || |||| | |||||||| || || || |||||||||| Sbjct 832866 CCTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTC 832925 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | ||||| || || | |||| ||||| || || || || |||||| || | | Sbjct 832926 CGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGG 832985 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | || || | ||||| || | || || || ||||||||||| |||| ||| || | Sbjct 832986 GTTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGG 833045 Query 62019 CCATTTTTATAATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 62076 ||||||| || || ||| ||| |||||||| | ||||| || | ||||| | Sbjct 833046 CCATTTTGATGCAGGT-TTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATG 833104 Query 62077 ATCTTCTGGAAG--GTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 ||| ||| || | | ||| ||||| || || || || | ||||| Sbjct 833105 TGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTC 833164 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || || || | ||| | | ||||| | || | |||||||| | || || || Sbjct 833165 ATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGACC 833224 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || || || || |||| || | ||| |||| | || ||| |||||||| | || Sbjct 833225 TGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGAT 833284 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || || || || | ||||| || || || || || ||||| || || | | | Sbjct 833285 TCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGAG 833344 Query 62315 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 |||| | |||| | |||||| || || || || |||| | ||| || || || Sbjct 833345 TTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGGAT 833404 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62433 || | || || || || || || | | || | || | || Sbjct 833405 GGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGAC-AGCCATCGTA 833463 Query 62434 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62493 || ||||| | ||| |||||||| || | |||||| || ||||| | |||||||| || Sbjct 833464 CGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGTA 833523 Query 62494 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATT 62553 |||||||||||||| | || || || | ||| |||||| ||| || | || | Sbjct 833524 GATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGCG 833583 Query 62554 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62613 | || || |||||||| || | ||| || ||||| || ||||| || | || | | | Sbjct 833584 CATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCAT 833643 Query 62614 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 || ||| | || || |||| || || || || || || |||||||| || ||||| Sbjct 833644 GTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGATT 833703 Query 62674 TCT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC--- 62727 | | ||| ||| || || || ||||| || || | || ||| | | || Sbjct 833704 TTTTGTGACTATT--TTAGAG-ACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGG 833760 Query 62728 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCA 62785 | | ||||||||||| | || | || |||| || || ||||| | || | | | | Sbjct 833761 TTTGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGA 833820 Query 62786 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 62845 || || | | || || |||||||| || |||||| ||||| || | || || Sbjct 833821 --CGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGC 833878 Query 62846 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 || || ||||| ||| || || ||||| || || ||| | || || || || | | Sbjct 833879 TGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACC 833938 Query 62906 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTT 62965 || || || || ||||| ||| | | ||||||| | || |||| | | Sbjct 833939 TGCGACTCGATGATCGCGAACCACAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCCT 833998 Query 62966 TCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC---A 63020 || | ||||| | ||||| | || |||||||| || |||||| | ||| | Sbjct 833999 TCGTTCTCGTACGTCGTGTACAGCTTC--TCGAACTCCTCACCCCAAG---TTTCCGGGA 834053 Query 63021 GTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63080 |||| ||||| || | ||| ||||||| |||| || ||| | ||| ||||| |||| Sbjct 834054 GTCCGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCA 834113 Query 63081 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63140 | || ||||| |||||||| || || || | || | | | ||||| || | Sbjct 834114 TGAACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGC 834173 Query 63141 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200 | || || || || | || | ||| | | ||||| ||||||||||||| || | Sbjct 834174 CGGTGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGA 834233 Query 63201 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63260 | || | | || ||||| ||||| || ||||| || | ||| | || ||||| || | Sbjct 834234 TCGCAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGT 834293 Query 63261 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTC 63320 |||| |||| ||| || | | || || || | || || || || | || || | | Sbjct 834294 AAACCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGC 834353 Query 63321 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 | | || || || | | | ||| | | || ||||| || ||| || ||||| || Sbjct 834354 CCTTCGCCCGGATGCAGTGCACATTCACA--CCGATTCCACCCGCCGACTTGGAGATCAA 834411 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 ||||| | || | ||| || || || || || |||||||| || |||| | | || Sbjct 834412 CGCGCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAG 834471 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 || || |||| || |||| | || |||| ||| | ||| || || ||||| Sbjct 834472 GAAGCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTG 834531 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 ||||| | || || || || |||||||||||||| || | ||| || ||| Sbjct 834532 CGTAAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCC 834591 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 ||||| || || || || ||||| | ||||||||| || | || || | |||| || Sbjct 834592 GTGAATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTT 834651 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || |||| || ||| || |||| || || || ||||| |||||||| |||||| Sbjct 834652 GATCTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTC 834711 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAG 63705 || ||||| || || |||| || || Sbjct 834712 CCGGTCGTAGATGATGGCCGAATTAAG 834738 >seq3141 Length=1574671 Score = 82.4 bits (90), Expect = 1e-10 Identities = 170/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 ||||| | ||| || || ||| ||| || |||||||| | || | ||||| || Sbjct 1345731 AACATGAGACAGGCAAAGTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAG 1345672 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || |||||||| ||||||||||| || ||||| || |||||||| || || Sbjct 1345671 AAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCG 1345612 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GC 32829 ||||| || || || || || || || || | | | ||| ||| | ||| || Sbjct 1345611 CTGAAGAAGATGCCCTCGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGC 1345552 Query 32830 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | | | ||||| || ||||| || ||||| || || ||||| |||| ||||| Sbjct 1345551 TTGCTCGAGATCCAGTTCATCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCG 1345492 Query 32889 ATAGCATTAAA 32899 || || || || Sbjct 1345491 ATCGCGTTGAA 1345481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633606884411600