Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2724 116 3e-21 seq3114 111 1e-19 >seq2724 Length=367895 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||||||||| ||||||| |||| || ||| |||| Sbjct 203263 ATGCAAATCTTCGTCAAGACTTTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCGTCG 203204 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 203203 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAG 203144 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || || || || | ||||| | |||||||| Sbjct 203143 CAGCGTCTGATTTTCGCCGGAAAGCAGTTGGAGGACGGCCGCACCCTTTCGGATTACAAC 203084 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| ||| | || || Sbjct 203083 ATCCAGAAGGAGTCTACGCTCCATCTGGTCCT 203052 >seq3114 Length=1216407 Score = 111 bits (122), Expect = 1e-19 Identities = 213/307 (69%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 50981 CCACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTT 51040 |||| | |||||| ||||| |||||| |||||||||| || | || |||| |||| || Sbjct 660720 CCACATCAAACTTGCGCTTGCAGCCCTCGTAGTTCATGTAGCGAATCTTGCCGAAAACTT 660779 Query 51041 TGCGTTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAA 51099 || || | | |||| ||||| | ||| || ||||||||| || || || Sbjct 660780 CCCGCTCGCGCCA-GCCCTGATCGTGGATGCCGGCGATGCTCCACATACAGCCGACGTAT 660838 Query 51100 TTGTTAGGATCGCGACCATCCACGCTG-TAATGATCGTTTAGAAATATGGCATAACCCAA 51158 ||| ||||| || || |||| |||| ||| | ||||| || | || || | | Sbjct 660839 CCGTTCGGATCACGTCCGTCCA-GCTGGTAACGGTCGTTGAGGTAGATTGCGGTTTCGAG 660897 Query 51159 TGCCATGTCTGC--ACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATG 51216 ||| || | ||| || ||||||| | || ||||| |||||||||||||||| Sbjct 660898 CGCCTCCTCCGGCGACTTGG--TCCATTCGAGGATCTTCTTCGCCCAGTACATGCGCAGA 660955 Query 51217 TAACCGTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCG 51276 | |||||||| |||||||| | |||| ||| ||||||||||||| |||||| Sbjct 660956 AAGCCGTGCATTTTGCCCTCCTTGACCATCTGCAGTTGGGCCGAGTTCCACAGGTCGTCG 661015 Query 51277 TGAGTTT 51283 || |||| Sbjct 661016 TGCGTTT 661022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311253362365