Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq2443 127 2e-24 >seq2443 Length=228914 Score = 127 bits (140), Expect = 2e-24 Identities = 225/326 (69%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 ||||| || ||| | |||||||| ||||||| | ||||| ||||| ||||| ||| Sbjct 220803 CACGGCTTCCACATCCACGAGTTTGGCGACAACACCAACGGGTGCACCTCGGCCGGGCCG 220862 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 ||||| || || ||| | ||| ||||| || || ||||| ||| ||||||| || Sbjct 220863 CACTTTAACCCGCACGGCAAGGAACACGGCGCCCCGGACGCGTCCGTCCGTCACGCCGGA 220922 Query 127664 GACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGACCGAAGTCAACATCATCGAC 127723 || ||||||| |||| ||| | | || | | | || | ||| |||||| |||| Sbjct 220923 GATTTGGGCAATGTGGTGGCCGAT-GCGGGGGGCGT--GGCCAAGGTCGACATCACCGAC 220979 Query 127724 CACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGTCGTGCACACG 127783 | || || ||| ||||||| ||| || | || | | ||||||||||| | Sbjct 220980 AAGCAGATCTCGCTGAGCGGACCGCTGAGCATCCTGGGCCGCACCGTGGTCGTGCACGCC 221039 Query 127784 GATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGGCAACTCGGGC 127843 |||| |||||||| ||| || || || | ||||||| |||||||| || ||||| Sbjct 221040 GATCCGGACGATCTGGGCGTGGGCGGACACGAGCTGAGCAAGACCACCGGAAATGCGGGC 221099 Query 127844 GGTCGGTTGGGGTGCGGGATCATTGG 127869 | ||| ||| ||||| | ||||| Sbjct 221100 GCCCGGCTGGCCTGCGGCGTGATTGG 221125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537581890753160