Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3141 192 7e-44 seq3156 111 2e-19 >seq3141 Length=1574671 Score = 192 bits (212), Expect = 7e-44 Identities = 409/604 (68%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 ||||||||||| || | || || ||||||||||| | || ||| || || || Sbjct 1346070 TAGAAATCTGCGTCCAACGTGAACACATTGTCAAGGCGGTTGGC---CATCACGCCCCAC 1346014 Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 |||||||| || || || || || || ||||| || |||||||| || | || || ||| Sbjct 1346013 TTTTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTTCCCTCGAGCGAGAT-GAA 1345955 Query 92863 TTCACT--AG-TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 || | || ||| || ||||||| ||| || |||||| | || |||| || Sbjct 1345954 CTCCATGAAGCTGAACGGGTTCTTGGTGTTGTAGATCTTTTCGTTGCCCAGCTCGAGCAG 1345895 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | | ||| || ||||| || |||||||| ||||||| || || ||||| || || || Sbjct 1345894 GAGGCGATCCGCGACAAACTCGATGTACTGCGACATCAGCTCGCAGTTCATGCCGAGCAG 1345835 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || || || || | || | ||| || | |||||| || |||||||| | ||| Sbjct 1345834 GTCGACGGGCAGGGCTTTCGTGAGGAACTCCTGCTCGATGACGACGGCTTCGCGGATGAT 1345775 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACGCAA 93098 ||| | || | | ||||| || || || || | || | |||| | || |||| Sbjct 1345774 TTCGAGCACGCGT-TCTTTGGAGGGCTTCTGGACCAGGTAGCGGAACATGAGACAGGCAA 1345716 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 ||||||| || | || ||||| || || |||| ||| || ||| || | || || | Sbjct 1345715 AGTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTCAGGCCGGGCA 1345656 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || || || ||||||||||| || || || || || || || || || || || | Sbjct 1345655 TGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCGCTGAAGAAGATGCCCT 1345596 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | ||||| || || || || | || ||| |||| || ||| || || |||||| | Sbjct 1345595 CGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGCTTGCTCGAGATCCAGT 1345536 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | | ||||| || || |||||||| | ||| || || || ||||| ||||| || | || Sbjct 1345535 TCATCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCGATCGCGTTGAACAAGT 1345476 Query 93339 AATC 93342 | || Sbjct 1345475 ATTC 1345472 >seq3156 Length=1714981 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 548437 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGC 548378 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||| |||||| || Sbjct 548377 GTGGGTTCGAACCCCACTTCTGACACAT 548350 Score = 107 bits (118), Expect = 2e-18 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 562090 GTCAGAATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTAAGGGAGCG 562149 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||||||||| |||||| ||| Sbjct 562150 TGGGTTCGAACCCCACTTCTGACACATT 562177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556838727430040