Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq2443 114 1e-20 >seq2443 Length=228914 Score = 114 bits (126), Expect = 1e-20 Identities = 229/333 (69%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 107448 ATTCCAATAATTCCGCAGCCCAAGCGGCCCCCCGAATTGCCTGTCGTTTTGCTAAGTGGG 107507 || ||||| | |||||| ||| ||| | |||| ||| || || || ||||| || | Sbjct 221128 ATCCCAATCACGCCGCAGGCCAGCCGGGCGCCCGCATTTCCGGTGGTCTTGCTCAGCTCG 221069 Query 107508 TGGTCGGTAAGGCCCAGGTCGTCGCGGTCCGTGTGCACGACCAAACTACGGCCCAGAATA 107567 || || | |||||| ||||| | || | ||||||||||| | |||||||| || Sbjct 221068 TGTCCGCCCACGCCCAGATCGTCCGGATCGGCGTGCACGACCACGGTGCGGCCCAGGATG 221009 Query 107568 CTCAGCGGGCCGTACAAACTGATTACGTTATCGCTCATGTTTA--TTGGCGTAAGCGCGG 107625 |||||||| ||| || ||| || ||| | |||| | ||||| | || | Sbjct 221008 CTCAGCGGTCCGCTCAGCGAGATCTGCTTGTCGGTGATGTCGACCTTGGCC-ACGCCCCC 220950 Query 107626 TGCAGCCGACGGAGCGCACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCG 107685 ||| | | | ||| ||||||||||| ||| ||||||| | | ||||| || | Sbjct 220949 CGCATCGGCCAC----CACATTGCCCAAATCTCCGGCGTGACGGACGGACGCGTCCGGGG 220894 Query 107686 CGCCATGCTGCTGATG-CGT-AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCT 107743 |||| || | || || ||| || |||||||| || ||||| |||||||| ||| | Sbjct 220893 CGCCGTGTTCCT--TGCCGTGCGGGTTAAAGTGCGGCCCGGCCGAGGTGCACCCGTTGGT 220836 Query 107744 TGTGTCGCCAAATTCGTGCACGTGAAAACCGTG 107776 |||||||||| ||||| | ||| || ||||| Sbjct 220835 GTTGTCGCCAAACTCGTGGATGTGGAAGCCGTG 220803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423023650958200