Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3071 446 3e-120 seq3141 318 1e-81 >seq3071 Length=929925 Score = 446 bits (494), Expect = 3e-120 Identities = 1255/1899 (66%), Gaps = 82/1899 (4%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 ||||| ||||||||| || |||||||| ||||| | |||||||||||| ||||| | Sbjct 832872 CCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTCCGGTTT 832931 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 ||||||| | |||| ||| || ||| || | || || || | | || ||| Sbjct 832932 TGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGC----CGT-AG--TTG 832984 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 ||| ||| || | || ||||| |||||| |||||||| ||||| |||| | Sbjct 832985 GGT--TCCGCGACGTG---GATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGT 833039 Query 243915 CTGCGGCCATGGTGATG-AGGTCCTT-CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 | |||||||| ||||| |||| | | ||||| || || || ||| ||||||| | Sbjct 833040 CGGCGGCCATTTTGATGCAGGTTTTGACGGAGATTTCCCACAC--CGTTTTGTAGA---G 833094 Query 243973 CTTGAGG---TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAG 244029 || | || |||| ||||| | ||||||| ||| | ||||| ||| | |||||| Sbjct 833095 CTCGCGGATGTGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGAT 833154 Query 244030 CTGGGTGCGCATGTTATCGTTCCACAGGCCCAAG--CGCTCCAGCGCCTCGACCAGGTGC 244087 | | | ||||| |||| |||||| | | || || | || | | || || || Sbjct 833155 TTTGTTCTTCATGTCGTCGTCCCACAG-CTCGAGTTCGGTG-AGGTCTTTGAGGAGATGG 833212 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||| || ||||| ||||| || ||||||||||| || | ||||| |||| | || | Sbjct 833213 TGGTTGACGACCTGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTAC 833272 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 || |||| | || ||||||| || || ||||| ||| ||| || ||||| || | Sbjct 833273 GGTTCGAAGGATTCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCG 833332 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCC 244267 | || || ||| | || |||||| | ||| |||| | ||||||| Sbjct 833333 AGGAGAAGGGAGTTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCC 833392 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 |||| | | || || ||| | || ||||||||| ||||||| | |||||| Sbjct 833393 CACAGGTCGGATGGGGCCTTG---TT------CCACATGTCGTACTGCAGGATGCCCTTG 833443 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC 244387 || || || | ||| ||||| || ||||| ||||| || ||| | | |||||| Sbjct 833444 CTAACCGGACAGCCATCGTACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTT 833503 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 | |||||||| ||||||||||||| |||||||| || ||||| | |||| | Sbjct 833504 GCCTCGAGGGCACCGTAGTAGATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCC 833563 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 ||| | | |||| || ||||| ||||| ||||||||| |||||| || ||||| Sbjct 833564 TCGCTCTCGTACGGGAAGCGCATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATT 833623 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 ||||| || | ||| ||| ||||||||||| |||| || || || ||||| ||||| | Sbjct 833624 CCGATCGGGCGGTGACGCATGTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATG 833683 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 ||||| | ||||| || || |||| || ||| || ||| ||| ||| Sbjct 833684 TCGATAATTTTGTTCAGATTTTTTGTGACTATTTTAGAGACTTCCTTGAGCTTCTGGAAG 833743 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 || ||| | | ||| ||| | |||||| ||||| |||| | Sbjct 833744 TCATACGACTTG---TCC--------GGTT----TGACAAACATGTTGACCGCGATCGAG 833788 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| ||||| | || ||| | | ||||| || || || ||||| ||| Sbjct 833789 GCCAAGTTGCACACGGCAATTTCGTCCTTGGACGAGTACTCCACGATTTCCGTGCAAAGG 833848 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || ||||| |||||||| | || ||| || ||| ||| |||||| ||||||||| Sbjct 833849 TTCGAACACTTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTG 833908 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTC 244866 || |||||| | ||| | || ||||||| ||| | ||| || ||| | ||| || || Sbjct 833909 TACAGCATGTACGGCACTCCCGTCTCGACCTGCGACTCGATGATCGC-GAACCACAGATC 833967 Query 244867 CCTAGCCTTGACCGTCC---TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | |||||||||| | | || ||| | || || |||||| |||||||| Sbjct 833968 CTGAGCCTTGACCTTACGAATGT-AGCGT--CCTTCGTTCTCGTACGTCGTGTACAGCTT 834024 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC-CGGGCACATGAGAC 244982 ||||||||| ||||| || || ||||| || | || ||||||||| |||| Sbjct 834025 CTCGAACTCCTCACCCCAAGTTTCCGGGAGTCCGGGACA-GTCGTGCGGGCACATCAGAC 834083 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| || || ||| ||| | || |||||| || || || ||||| || || | || Sbjct 834084 ACCAGTCCTCGTTAGCCTCGACTCGCTTCATGAACAGATCCGGAATCCACAGCGCGTAGA 834143 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | | ||||| | | ||| ||| ||| ||||| ||| ||| |||||||| |||| Sbjct 834144 ACATGTCCCGAGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAAGTCCAAAAACTCAA 834203 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 ||| || ||||||| || |||| |||| || | || ||||||||||||||||| | Sbjct 834204 AGATATCTCCGTGCCACGGTTCCAGATAGATCGCAAACGCCCCGGGCCGCTTGTTGCCGC 834263 Query 245163 CCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 ||||||| || || | | |||| | | | ||| | ||||| | ||||| | Sbjct 834264 CCTGGTCAACGTACCGCGCCGTGTTGTTGTAAACCCTCAGCATCGGCACCAGCCCGTTCG 834323 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG--TTGCTGATGGACAT 245280 || ||||| || || ||||| | |||||| ||| || | ||| || ||| Sbjct 834324 AGATCCCGTTCGTTCCGGCAATGTACGTGCCCTTCGCCCGGATGCAGTGCACATTCACA- 834382 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | ||| || || ||||||||| | ||||| ||| | ||||| || || Sbjct 834383 -CCGATTCCACCCGCCGACTTGGAGATCAACGCGCACTGCTTCAGCGTGTCGTAAATTCC 834441 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG----CTTGG 245396 || || || || |||| | | ||| ||||| || |||||||| || | | Sbjct 834442 GTCGATACTATCGTCGCTCATCGTCAACAGGAAGCACGACGACAGCTGCGGACGCCGCGT 834501 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACC 245456 ||| || || |||| || || |||||| |||||||| || ||| || | Sbjct 834502 GGCCGC-CG---CAAACATGGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACAGCAGGT 834557 Query 245457 CGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGA 245516 |||||||| | ||||| |||| ||||| || | || || ||| | Sbjct 834558 TGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGTGAATGCCAACCGCCACCCGCATCA 834617 Query 245517 GGGTGTGCTGGGGCGTCTCGA-----TGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCG 245571 | ||||||| || ||| | | | |||| | ||| |||| ||| || || Sbjct 834618 GCATGTGCTGCGGACGCTCCACCACCTTG--CCCTTG---ATCTTCAGCAGGTACGACCG 834672 Query 245572 CTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 ||| ||||||||||| |||||||| |||||||||||| Sbjct 834673 CTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTC 834711 >seq3141 Length=1574671 Score = 318 bits (352), Expect = 1e-81 Identities = 394/536 (74%), Gaps = 5/536 (1%) Strand=Plus/Plus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||||| || || |||||| ||||||| | ||||| ||||| ||||||||| | |||| Sbjct 1345479 TGTTCAACGCGATCGAGACGCTGCCCTGTGTGAAGAAAAAGGCTGACTGGGCGATGAACT 1345538 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||| ||| |||| | || |||||| | |||| || || |||||||||||| Sbjct 1345539 GGATCTCGAGCAAGCACGCCAACTTTGGCGAGCGCGTGGTCGCTTTCGCCGCCGTCGAGG 1345598 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATG 42788 ||||||||||| ||| |||||| |||||||||||||||||| || || || ||| Sbjct 1345599 GCATCTTCTTCAGCGGCAGCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTC-ATG 1345657 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 ||||| || |||||||||||||| || ||| | |||||||| || || | |||||| Sbjct 1345658 CCCGGCCTGACCTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTCCACACCGACTTT 1345717 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCC 42908 ||||| ||| ||||| || |||| || |||||||| || || || || | | Sbjct 1345718 GCCTGTCTCATGTTC---CGCTACCTGGTCCAGAAGCCCTCCAAAGAACGCGTGCTCGAA 1345774 Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC 42968 |||||| || ||||| | |||||| |||||||||||||| | | |||||||| | Sbjct 1345775 ATCATCCGCGAAGCCGTCGTCATCGAGCAGGAGTTCCTCACGAAAGCCCTGCCCGTCGAC 1345834 Query 42969 CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTC 43028 ||| ||||||||||| ||| || |||| |||||||| ||| ||||| || | ||| Sbjct 1345835 CTGCTCGGCATGAACTGCGAGCTGATGTCGCAGTACATCGAGTTTGTCGCGGATCGCCTC 1345894 Query 43029 CTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAG 43088 ||| | || |||| | |||||||||| | ||| ||| ||| |||||| Sbjct 1345895 CTGCTCGAGCTGGGCAACGAAAAGATCTACAACACCAAGAACCCGTTCAGCTTCATGGAG 1345954 Query 43089 AACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||| | ||||| ||||| ||||| ||||||||| |||| ||| ||||| Sbjct 1345955 TTCATCTCGCTCGAGGGAAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 1346010 Score = 140 bits (154), Expect = 6e-28 Identities = 191/264 (72%), Gaps = 12/264 (5%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACT---GTC 42391 |||||| | ||||||| | || ||| | |||||| || || ||||||| || ||| Sbjct 1345031 CTGGACGGTCGAGGAGGTCGATCTGTCGAAGGACTTGGGCGACTGGGAGAAGCTCAAGTC 1345090 Query 42392 ---TGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGG 42448 |||||| | ||| ||| | | | ||||||||||||||||| || ||||| Sbjct 1345091 GGGTGAGAAGCAC----TTTATCTCGCA--CGTGCTGGCCTTCTTCGCCGCTTCGGACGG 1345144 Query 42449 CATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCG 42508 ||| || || |||||||||| | |||||| | ||||||||| |||||||| Sbjct 1345145 CATCGTGAACGAGAACCTGGTCGAGCGGTTCAGCCAGGAGGTGCAGGTGACGGAGGCGCG 1345204 Query 42509 CTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACT 42568 ||||||||||||||||||||| || || |||||||||||| ||| ||||| | || Sbjct 1345205 CTGCTTCTACGGCTTCCAGATCGCGATGGAGAACGTGCACAGCGAGATGTACTCGCTGCT 1345264 Query 42569 GCTCAACACGTACATCCTGGATCC 42592 | | |||| ||||||| ||| || Sbjct 1345265 GATTGACACCTACATCCGGGACCC 1345288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944301768754960