Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3114 116 3e-21 seq3133 89.7 4e-13 seq3122 89.7 4e-13 seq2724 89.7 4e-13 seq3140 84.2 2e-11 >seq3114 Length=1216407 Score = 116 bits (128), Expect = 3e-21 Identities = 211/306 (69%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 37821 GCCGACACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAG 37880 ||| | |||||||| | |||||||| |||| ||| | ||| | || ||||| || Sbjct 661026 GCCAAAACGCACGACGACCTGTGGAACTCGGCCCAACTGCAGATGGTCAAGGAGGGCAAA 660967 Query 37881 ATGCATCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCT 37940 ||||| | | |||||||||| ||| ||||| || | |||||| | | | Sbjct 660966 ATGCACGGCTTTCTGCGCATGTACTGGGCGAAGAAGATCCTCGAATGGACCAAGTCGCCG 660907 Query 37941 CAGACCGCGCTCAACTACGCCATTTATCTCAATGATAAGTAC-AGCTTGGACGGGCGTGA 37999 || |||||| | ||| || || ||||| || ||| |||| |||||| ||||| Sbjct 660906 GAGGAGGCGCTCGAAACCGCAATCTACCTCAACGACCGTTACCAGCT-GGACGGACGTGA 660848 Query 38000 TCCCAACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCG 38059 ||| ||||| |||||||||||| ||||| || ||| | |||||| | |||||| Sbjct 660847 TCCGAACGGATACGTCGGCTGTATGTGGAGCATCGCCGGCATCCACGATCAGGGCTGGCG 660788 Query 38060 CGAGATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTT 38119 |||| ||| |||||||||||| |||||||||||| | || || | ||||| Sbjct 660787 CGAGCGGGAAGTTTTCGGCAAGATTCGCTACATGAACTACGAGGGCTGCAAGCGCAAGTT 660728 Query 38120 TAATGT 38125 | |||| Sbjct 660727 TGATGT 660722 >seq3133 Length=1421877 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||||||| || ||| ||||||||| |||||||| || | Sbjct 291920 CCACCACGCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCG-A 291862 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || |||| ||||||||||| || ||||| |||||||||||| || Sbjct 291861 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGG 291802 Query 34020 CACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 291801 GATTCCCTCCTTGTCC 291786 >seq3122 Length=1344033 Score = 89.7 bits (98), Expect = 4e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGT-GCTCTCCTTCTGAATGTTGTAAT 33955 ||| || || | ||| |||||||||||||| ||||| | || ||||||| | |||||| | Sbjct 593313 GAATCCACCCCGCAGGCGCAGCACCAGATGCAGCGTCGATC-CCTTCTGGACGTTGTAGT 593255 Query 33956 CTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| || | || |||| ||||||||||| || ||||||||||||||||| Sbjct 593254 CGGACAAGGCGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 593197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| ||||| ||||||||||| || ||||||||| |||||||| || | Sbjct 596731 ACCTCCGCGCAGACGCAGTACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 596672 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 596671 CAAGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATC 596618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| ||||| ||||||||||| || ||||||||| |||||||| || | Sbjct 597871 ACCTCCGCGCAGACGCAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 597812 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || |||| |||| ||||| || || || ||||| ||||| ||||| Sbjct 597811 CAAGGTACGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATC 597758 >seq2724 Length=367895 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||| |||||||| ||||| ||||||||| ||||||||||| | Sbjct 203037 CCACCACGCAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCG-A 203095 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| ||||| ||||| ||||| || ||||| |||||||| || ||| Sbjct 203096 AAGGGTGCGGCCGTCCTCCAACTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGCGG 203155 Query 34020 CACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 203156 GATTCCCTCCTTGTCC 203171 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || |||||||||| ||||| || ||||||||| ||||||||||| | | Sbjct 202809 CCTCCGCGGAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 202868 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || |||| ||||| ||||| ||||| || ||||| |||||||| || Sbjct 202869 AAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTC 202921 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||||| |||||||| ||||| ||||||||| ||||||||||| | Sbjct 202125 CCTCCGCGGAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCG-A 202183 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 202184 AAGGGTGCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGACGCTGCTGATC 202237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||||||||| || |||||||| ||||||||||| | Sbjct 202353 CCACCACGCAGACGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCCG-A 202411 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| || | |||||| ||||| || || || ||||||||||| || Sbjct 202412 AAGAGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGG 202471 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| || || ||| | | ||| | |||| | || ||| Sbjct 202472 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCGATCGTATCGGAAGGCTCGA 202530 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || ||||| ||||| ||||| ||||| Sbjct 202531 CCTCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 202579 >seq3140 Length=1521851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || ||| || | ||| || |||||||| || || ||| ||||||||| |||||||| || Sbjct 429093 GATACCACCGCGCAGACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTC 429152 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 | || || |||| |||| ||||||||||| || |||| ||||||||||| Sbjct 429153 GGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 429212 Query 34017 CGGCACGCTCTCTTTGTCC 34035 ||| | | ||| |||||| Sbjct 429213 CGGGATTCCCTCCTTGTCC 429231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397047054903142