Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2926 118 2e-21 seq3141 96.9 8e-15 >seq2926 Length=549490 Score = 118 bits (130), Expect = 2e-21 Identities = 296/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 297280 CCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATA 297339 ||| || || || || || ||| || || ||||| | |||| || | |||| ||| Sbjct 176170 CCAGCCCGTTCCAATACCTTCCGAGCCGTTGACCAGCACCATCGGGATGATGGGCAGATA 176111 Query 297340 ATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGT 297399 || ||||| ||||| | ||||| ||| |||||| ||| || ||||||| Sbjct 176110 CCACAGCGGTTCAATCTTCTGGTTATCATCGTACTGATATTCCAGCAGCGGATCGTCCAA 176051 Query 297400 ATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGC 297459 | ||||| | || ||| | | | || | |||||||| || || | ||| || Sbjct 176050 CGGGTGGAAAATCAACCGGGTCAGCGCGGACATCATCGTGAAAATGTAACGCGGACTAGC 175991 Query 297460 GTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGAT 297519 | ||||||||||| ||| | || ||||||||| || |||| ||| | |||||| Sbjct 175990 GCTGTCCTTACCACCGGCCAAACGCGTACCGAACTGACCACCCGGGTACAGCAGGTTGAT 175931 Query 297520 GTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA-TGCTT 297578 ||| ||||| |||||| | | ||| || | ||| ||||||||| ||||| ||| | Sbjct 175930 GTTGTTGCTGCCGACAAAGTTCTGCGCCAAGTTGACGATGGTCGAGCAAAGAGACTGC-T 175872 Query 297579 CGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGT 297638 | || || || || ||| || |||||| | ||| | |||||| ||||| || | Sbjct 175871 CACCGTGATGGTACGCGGACATTTCCGCAACGGACCCGGCCAGCTGTGCGACCTTTACCT 175812 Query 297639 --CGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTG 297694 || | ||| || |||||||| || ||| | || || ||||||||| || || Sbjct 175811 CCCGCTTGTC--GTTACGCTTGAAACAGGTGA--ACATGACCTTCCGTTGACCCGGCTTC 175756 Query 297695 AAACCATCAACGACCGACGGAAT 297717 || ||||| | || ||||||| Sbjct 175755 AACCCATCCAGCACGCACGGAAT 175733 >seq3141 Length=1574671 Score = 96.9 bits (106), Expect = 8e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 |||||||||| || || ||| ||||||||||| || || || || ||| | | || Sbjct 1345841 GGCATGAACTGCGAGCTGATGTCGCAGTACATCGAGTTTGTCGCGGATCGCCTCCTGCTC 1345900 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 | ||| || | || || | |||||| |||||||||| || ||| |||||| |||| Sbjct 1345901 GAGCTGGGCAACGAAAAGATCTACAACACCAAGAACCCGTTCAGCTTCATGGAGTTCATC 1345960 Query 243688 TCGCTTCAAGGGAAA-ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||| || ||||||| || ||||||||||| ||| ||| | || || ||| Sbjct 1345961 TCGC-TCGAGGGAAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTACCAA 1346011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102835191708850