Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3071 161 1e-34 seq3141 136 5e-27 >seq3071 Length=929925 Score = 161 bits (178), Expect = 1e-34 Identities = 858/1347 (64%), Gaps = 35/1347 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || || ||||| ||| ||||||| | || | || ||||||| Sbjct 832910 CGCAGGTAGTACATTCCGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTG 832969 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCAT--ACTT-TGGGATTGATCGATG 113713 | ||| | ||||| |||| || | || | | || ||||| || |||||| Sbjct 832970 AGTTTGCCGTA-GTTGGG--TTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATG 833026 Query 113714 AAGCGTCCACGATCCGCCGCCATATCAAT-CACATCCTTCATCTTGATTTCCCACACAGT 113772 ||| || || || || ||||| | || || | || | |||||||||||| || Sbjct 833027 AAGGCGCCCCGGTCGGCGGCCATTTTGATGCAGGTT-TTGACGGAGATTTCCCACACCGT 833085 Query 113773 TCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGC 113832 | ||||||| | || | | ||||| || |||| | ||||||||||| || Sbjct 833086 TTTGTAGAGCTCGCGGATGTGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTT-GC 833144 Query 113833 CTTGACCATGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 113889 || | |||| | |||||| || | ||| || | | | |||| || | Sbjct 833145 --TGGCGATGATTTTGTTCTTCATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTT 833202 Query 113890 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATT 113949 | |||||| | ||||| || ||||| || | || ||| | |||| || Sbjct 833203 GAGGAGATGGTGGTTGACGACCTGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTT 833262 Query 113950 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGG 114009 || ||||| || || ||| | || ||||| || | |||||| |||||||| || || || Sbjct 833263 GGAGGTGTACGGTTCGAAGGATTCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGG 833322 Query 114010 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGC 114069 ||| || || | ||||||| ||| |||| || | | || ||||||||| | Sbjct 833323 CATTGGGGCGAGGAGAAGGGAGTTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGG 833382 Query 114070 GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 114129 | ||||||| | | || || | |||||| || |||| ||||| || | Sbjct 833383 GGCCCAGTCCCACAGGTCGGATGGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTT 833442 Query 114130 GGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCT 114189 | | || | || || | || ||||| | || || ||| || | ||| |||| Sbjct 833443 GCTAACCGGACAGCCATCGTACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCT 833502 Query 114190 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT--GGCC 114247 ||||||||||| ||| || || || || || || | |||| || || ||| Sbjct 833503 TGCCTCGAGGGCACCGTAGTAGATGGTTTCGAAGATTTGCTGGTTCA--GCTTTTGGGCT 833560 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307 || ||| || ||| || || || || || | || || | || ||||||||| Sbjct 833561 TCCTCGCTCTCGTACGGGAAGCGCATCAGGATGAACGCGTCGGCCATTCCCTGGACACCG 833620 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAA 114364 | || || ||||| || | ||| || || || || |||| || || || | Sbjct 833621 ATTCCGATCGGGCGGTGACGCATGTTGGA---GCGCTTGGCCTCCGGAACTGGGTAGTAG 833677 Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 || | ||||||| | || |||||||| ||||| | || | || ||| | ||||| Sbjct 833678 TTGATGTCGATAATTTTGTTCAGATTTTTTGTGACTATTTTAGAGACTTCCTTGAGCTTC 833737 Query 114425 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | | | || | || | ||| | |||||| || | | ||||| || |||| Sbjct 833738 TGGAAGTC-ATACGACTTGTCCGGT--TTGACAAACATGTTGACCGCGATCGAGGCCAAG 833794 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 || ||||| | | || ||||| | |||||| | |||||||| || | || ||| Sbjct 833795 TTGCACACGGCAATTTCGTCCTTGGACGAGTACTCCACGATTTCCGTGCAAAGGTTCGAA 833854 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 | ||| |||||||| | ||||| || || ||| ||| || || |||||||| ||| Sbjct 833855 CACTTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGC 833914 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT-CGGCGGC 114663 ||||| ||| |||||||| || |||| || || || ||| | || | | | | Sbjct 833915 ATGTACGGCACTCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGATCCTGAGCC 833974 Query 114664 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 114723 | | || | || || || || | ||||||| | ||||| || || ||||| Sbjct 833975 TTG-ACCTTACGAATGTAGCGTCCTTCGTTCTCGTACGTCGTGTACAGCTTCTCGAACTC 834033 Query 114724 TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACC 114783 |||||| | || | ||| || || | | ||||| | ||| |||| | || Sbjct 834034 CTCACCCCAAGTTTCCGGGAGTCCGGGACAGTCGTGCGGGCACATCAGACACCA--GTCC 834091 Query 114784 ACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCC 114841 | | |||| || ||||||||||| || || || ||||| || || |||| | ||| Sbjct 834092 TCGTTAGCCTCGACTCGCTTCATGAACAGATCCGGAATCCACAGCGCGTAGAACATGTCC 834151 Query 114842 CGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 114900 ||| || || || || | | || || || ||| |||||||| || | |||||| Sbjct 834152 CGAGCGCGGACCTCCTCCTTGCCGGTG-TTTTTCTTCAAGTCCAAAAACTCAAAGATATC 834210 Query 114901 CGCGTGCCACGGTTCCAGGTACACCGC 114927 |||||||||||||||| || | ||| Sbjct 834211 TCCGTGCCACGGTTCCAGATAGATCGC 834237 >seq3141 Length=1574671 Score = 136 bits (150), Expect = 5e-27 Identities = 352/526 (67%), Gaps = 8/526 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| ||||||||||||||| ||||| || || | ||| |||||| Sbjct 1346008 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTTCCCTCGAGCGAGATGAACTCCAT 1345949 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGTTGGCACCCCAATCTGTTTGAGGAGAC 125876 || || |||||||| | ||| | || | || | |||| || ||||| | Sbjct 1345948 GAAGCTGAACGGGTTCTTGGTGTTGTAGATCTTTTCGTTGCCCAG-CTCGAGCAGGAGGC 1345890 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||||| ||| |||| ||||||| |||||| ||| ||||||| |||| |||| Sbjct 1345889 GATCCGCGACAAACTCGATGTACTGCGACATCAGCTCGCAGTTCATGCCGAGCAGGTCGA 1345830 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 || || || | | || |||| ||| ||| || | |||||||| || | ||| || Sbjct 1345829 CGGGCAGGGCTTTCGTGAGGAACTCCTGCTCGATGACGACGGCTTCGCGGATGATTTCGA 1345770 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAACTCT 126055 | | | || | ||| || || | | || | | | || |||||| || Sbjct 1345769 GCACGC-GTTCTTTGGAGGGCTTCTGGACCAGGTAGCGGAACATGAGACAGGCAAAGTCG 1345711 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 |||||| |||||||| || ||||| || || ||||||||| ||| || |||||||| Sbjct 1345710 GTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTCAGGCCGGGCATGAGG 1345651 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGA-GAAGAAGATTCCCTCCAC 126174 || |||||||| | |||||| || | || | | ||| ||||||||| ||||| || Sbjct 1345650 CCACGCTTCTTGAGCCAGAAGATGG-ACGCGAAGCTGCCGCTGAAGAAGATGCCCTCGAC 1345592 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA-CCACTTCA 126233 ||||| || | | ||||| ||||| | ||| ||| | | ||| |||| Sbjct 1345591 GGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTG-GCGTGCTTGCTCGAGATCCAGTTCA 1345533 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||||| | |||||||||| | ||| || | |||| |||||| Sbjct 1345532 TCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCGATCGC 1345487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597329922396680