Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3071 123 2e-23 seq2724 120 3e-22 seq3122 109 5e-19 seq3133 102 8e-17 seq3140 95.1 1e-14 >seq3071 Length=929925 Score = 123 bits (136), Expect = 2e-23 Identities = 568/883 (64%), Gaps = 31/883 (4%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTC--AGAACTACTGTATTGCACAATTTCTGCGC 154644 || ||||||||||| ||||||||||| || | || | ||| | ||| ||||| | || Sbjct 833786 GAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGACGA--GTACTCCACGATTTCCGTGC 833843 Query 154645 ACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGT 154704 | | || || |||||||| | ||| | ||| || || |||||| |||| Sbjct 833844 AAAGGTTCGAACACTTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 833903 Query 154705 CTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAA--A 154762 | ||||||| |||||||| ||||| || || || | || || || ||||| | Sbjct 833904 CCTTGTACAGCATGTACGGCACTCCCGTCTCGACCTGCGACTCGATGAT--CGCGAACCA 833961 Query 154763 CAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATA--TTGTTCGTAC 154820 |||| | |||| || | || | | | || |||| |||| || | || |||| Sbjct 833962 CAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCCTTCGTTCTCGTACGTCGT--GTAC 834019 Query 154821 AGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATC 154880 || || || ||||| || | |||| | ||||||||| || || |||||| Sbjct 834020 AGCTTCTCGAACTCCTCACCCCAAGTTTCCGGGAGTCCGGGACAGTCGTGCGGGCACATC 834079 Query 154881 AATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCG 154940 | |||| ||||| | || || ||||| |||| |||||| | ||||| ||| Sbjct 834080 AGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATGAACAGATCCGGAATCCACAGCGCG 834139 Query 154941 TACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAA 155000 || |||| || || || || || ||| ||||| ||| || | |||||| Sbjct 834140 TAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAAGTCCAAAAAC 834199 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCG---TTTT 155057 ||| | || || |||||||||| || | ||| | || | ||| || || || Sbjct 834200 TCAAAGATATCTCCGTGCCACGGTTCCAGATAGATCGCAAACGCCCCGGGCCGCTTGTTG 834259 Query 155058 CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCG 155117 || || || || |||| ||| | || ||||| || | || || || ||| ||| Sbjct 834260 CCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAAACCCTCAGCATCGGCACCAGCCCG 834319 Query 155118 CTGGCCGTGCCGTTGGT----GCCACGTATCGCGCTGCCGCGAGCACGCGCTTTA-TGAA 155172 | | | ||||| || || | ||| || |||| || || | | | || | Sbjct 834320 TTCGAGATCCCGTTCGTTCCGGCAATGTA-CG---TGCCCTTCGCCCG-GATGCAGTGCA 834374 Query 155173 CATTAACGCCCAAACC-TCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCG 155231 |||| || || | || |||||| | || || || ||| || | | || || ||| Sbjct 834375 CATTCACACCGATTCCACCCGCCG-ACTTGGAGATCAACGCGCACTGCTTCAGCGTGTCG 834433 Query 155232 TACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGT 155291 || ||||| | ||| || || || ||| |||||||| ||| ||||| || | || || Sbjct 834434 TAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGAAGCACGACGACAGCTGCGGA 834493 Query 155292 TGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTT--GGCGG 155349 | | | | |||||||| | || || ||||| ||||| | | | | | | Sbjct 834494 CGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAA-GTACCGCTCCGACAG 834552 Query 155350 TTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGC 155409 | |||||| || || ||||| ||||||||||| | ||||| || || | |||||| | Sbjct 834553 -CAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGTGAATGCCAACCGCCACCC 834611 Query 155410 GCATCAGCATGTGTTGAATGCGCTCCGCAACGCGGCCGTTGAT 155452 ||||||||||||| || |||||| | || ||| ||||| Sbjct 834612 GCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTTGAT 834654 >seq2724 Length=367895 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| || || || || ||||||||||| | | |||||| |||| Sbjct 203052 AGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCGTCC 203111 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| |||| || ||||||||||| || || ||||| || || || Sbjct 203112 TCCAACTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCC 203171 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | || | | |||| || || || | || | ||| Sbjct 203172 TGGATCTTAGCCTTGACATTCTCGATGGTGTCCGACGGC-TCGACCTCGAGGGTGATGGT 203230 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||||||||| || ||||| |||||||| Sbjct 203231 CTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 203263 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| || || || || || ||||| || | | || || | ||| Sbjct 202596 AGGACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGACCATCT 202655 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| ||||| | || || ||||||||||| ||||| || ||||| || || Sbjct 202656 TCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCC 202715 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || || || || || | ||| | |||| Sbjct 202716 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAGAGTGATGGTC 202775 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||||| ||||| ||||| || |||||| Sbjct 202776 TTGCCGGTCAGGGTTTTCACGAAGATCTGCATT 202808 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| ||||| || || || ||||||||||| | | ||| || |||| Sbjct 202824 AGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGACCGTCC 202883 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| | || || ||||||||||| || |||||||| || || ||| Sbjct 202884 TCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 202943 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || || || || || | ||| | |||| Sbjct 202944 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCCAAAGTAATGGTC 203003 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 203004 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 203035 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| |||||||| || || ||||||||||| | | || || |||| Sbjct 202368 AGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 202427 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| ||||| | || || |||||||| || || || ||||| || || || Sbjct 202428 TCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 202487 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | || || || | ||| | |||| Sbjct 202488 TGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCGACCTCCAGAGTGATGGTC 202547 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 202548 TTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 202579 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| || || ||||||||||| | | ||| || | || || |||||| Sbjct 201921 TGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGACAAGGTACGACCATCCTCGAGCTGC 201980 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || || |||||||| || || || ||||| || || || || || || Sbjct 201981 TTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 202040 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||||| | || || || | ||| | |||||| |||||| Sbjct 202041 GCCTTGACATTCTCGATCGTATCGGACGGTTCGACCTCCAGAGTAATGGTCTTACCGGTC 202100 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| || |||||| Sbjct 202101 AGCGTCTTCACGAAGATCTGCATT 202124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||| || || || || ||||||||||| | | |||||| |||| Sbjct 202140 AGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCGTCC 202199 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| | || || |||||||| || || || ||||| || || || Sbjct 202200 TCCAACTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 202259 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || || || || || | || | |||| Sbjct 202260 TGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTC 202319 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| || || ||||| || ||||| Sbjct 202320 TTACCGGTCAGGGTCTTCACGAAGATCTGCAT 202351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || | |||| ||||| || || || |||||||| || | Sbjct 201669 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 201728 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||| || || | || || ||||||||||| ||||| Sbjct 201729 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 201788 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || || ||| || ||| | || || || || || Sbjct 201789 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAGGGCTCAACC 201848 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||| ||||||| || || || || || |||||| Sbjct 201849 TCCAAGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATT 201896 >seq3122 Length=1344033 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || ||||||| ||||| || || || |||||||| || | Sbjct 596503 ACCTCCGCGCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 596444 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || ||||||||||| |||||| | || || ||||| || || ||||| Sbjct 596443 CAGGGTACGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGATCTGGAGG 596384 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || || | ||||| || || || Sbjct 596383 GATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGAC 596324 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||||||| || ||||| || ||||| Sbjct 596323 CTCCAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGAAGATCTGCAT 596276 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || ||||||| ||||| || || || |||||||| || | Sbjct 596731 ACCTCCGCGCAGACGCAGTACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 596672 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || | |||||| || || | || || ||||| || || ||||| Sbjct 596671 CAAGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGG 596612 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| || ||| | ||||| | || || Sbjct 596611 AATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCCGAAGGTTCGAC 596552 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||||||| || ||||| || ||||| Sbjct 596551 CTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 596504 >seq3133 Length=1421877 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | | |||||| | || Sbjct 291905 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 291846 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || |||||||| || || || ||||| || || || Sbjct 291845 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCC 291786 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | ||||| |||| || || || | ||| | ||| Sbjct 291785 TGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGC-TCGACCTCGAGAGTGATGGT 291727 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | ||||| ||||| || ||||| Sbjct 291726 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 291694 >seq3140 Length=1521851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || || | || || || || || |||||||| || | Sbjct 429096 ACCACCGCGCAGACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 429155 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || |||||||||||||| | || | |||||||| || || || Sbjct 429156 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGG 429215 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||| || || || || | | || ||||| ||| ||| | || || | || | Sbjct 429216 GATTCCCTCCTTGTCCTGGA-TCTTGGCTTTGACATTCTCGATCGTGTCCGATGGCTCGA 429274 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| |||| || || ||||| || ||||| Sbjct 429275 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 429323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499624995329240