Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3071 338 6e-88 >seq3071 Length=929925 Score = 338 bits (374), Expect = 6e-88 Identities = 1084/1666 (65%), Gaps = 53/1666 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| |||||| || |||||| ||||||||| || ||||| | |||| | Sbjct 834702 TACAACTACTTTGGCTTCAAGACGCTGGAGCGGTCGTACCTGCTGAAGATCAAGGGCAAG 834643 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||| ||||| || |||||||||| || || | || |||||||| | ||| Sbjct 834642 GTGGTGGAGCGTCCGCAGCACATGCTGATGCGGGTGGCGGTTGGCATTCACGGGCTGGAC 834583 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGGGACAAGAGGTA---TACCA 93889 || || |||| | || ||| || ||| | || |||| ||| Sbjct 834582 ATT--GAC------GCGGCCATTGAGACGTACAACCTGCTGTCGGAGCGGTACTTTACGC 834531 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||| | |||||| |||| |||| || | | || ||| |||| ||||| |||| Sbjct 834530 ACGCCTCGCCGACCATGTTTGCGGCGGCCACGCGGCGTCCGCAGCTGTCGTCGTGCTTCC 834471 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || |||||| | | ||| ||| |||||||| ||||| || ||| | || ||| Sbjct 834470 TGTTGACGATGAGCGACGATAGTATCGACGGAATTTACGACACGCTGAAGCAGTGCGCGT 834411 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 ||||| || | ||||| |||||||| | | ||| ||| | | || || | ||| Sbjct 834410 TGATCTCCAAGTCGGCGGGTGGAATCGGTGTGAATGTGCACTGCATCCGGGCGAAGGGCA 834351 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | ||||| ||| || || || | ||| ||||| || || || ||||| |||| | || Sbjct 834350 CGTACATTGCCGGAACGAACGGGATCTCGAACGGGCTGGTGCCGATGCTGAGGGTTTACA 834291 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| ||||||| ||||| |||||||| || | | || || | || ||| ||| Sbjct 834290 ACAACACGGCGCGGTACGTTGACCAGGGCGGCAACAAGCGGCCCGGGGCGTTTGCGATCT 834231 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 |||| || || ||||||| || | | || | ||| || || ||| ||||| Sbjct 834230 ATCTGGAACCGTGGCACGGAGATATCTTTGAGTTTTTGGACTTGAAGAAAAACACCGGCA 834171 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | || | ||| | |||||||| || ||| | || || || || |||| Sbjct 834170 AGGAGGAGGTCCGCGCTCGGGACATGTTCTACGCGCTGTGGATTCCGGATCTGTTCATGA 834111 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || |||||| ||| | |||| |||| | || || | || ||||||||||| Sbjct 834110 AGCGAGTCGAGGCTAACGAGGACTGGTGTCTGATGTGCCCGCACGACTGTCCCGGACTCC 834051 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGG--GCA 94426 | || ||| || | || || | |||| | ||||| | || ||| || Sbjct 834050 CGGAAACTTGGGGTGAGGAGTTCGAGAAGCTGTACACGACGTACGAGAACGAAGGACGCT 833991 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | ||||| | || | |||| |||||| |||| | || ||||| | Sbjct 833990 ACATTCGTAAGGTCAAGGCTC--AGGAT-CTGTGGTTCGCGATCATCGAGTCGCAGGTCG 833934 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 ||||||| ||| ||||| ||| ||||||| || |||| ||| |||||||||| Sbjct 833933 AGACGGGAGTGCCGTACATGCTGTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGA 833874 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 || |||| || ||| | ||||| || ||||| || || || ||||| | || || Sbjct 833873 ACATCGGCACCATAAAGTGTTCGAACCTTTGCACGGAAATCGTGGAGTACTCGTCCAAGG 833814 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 |||| ||||| ||||| ||| ||| ||| ||| | ||| || | || | | | Sbjct 833813 ACGAAATTGCCGTGTGCAACTTGGCCTCGATCG--CGGTCAACATGTTTGTCAAAC-CGG 833757 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCT 94726 ||| ||| || || | || |||| | | || | || | ||| Sbjct 833756 ACAAGTC---------GTATGACTTCCAGAAGCTCAAGGAAGTCTCTAAAA---TAGTCA 833709 Query 94727 TGAAC---CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 || ||||||| | ||||||| |||| |||||| || |||||||| || || Sbjct 833708 CAAAAAATCTGAACAAAATTATCGACATCAACTACTACCCAGTTCCGGAGGCCAAGCGCT 833649 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || ||||| ||||| |||||||| | || |||||| | | Sbjct 833648 CCAACATGCGTCACCGCCCGATCGGAATCGGTGTCCAGGGAATGGCCGACGCGTTCATCC 833589 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 ||||||| | || ||||| | || || |||| | | || ||||||| Sbjct 833588 TGATGCGCTTCCCGTACGAGAGCGAGGAAGCCCAAAAGCTGAACCAGCAAATCTTCGAAA 833529 Query 94904 GCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 ||| || ||||| ||| | || ||| | || | ||| | ||| |||||| | Sbjct 833528 CCATCTACTACGGTGCCCTCGAGGCAAGCTGTGAAATTGCCGAGAA-GGACGGAA---CC 833473 Query 94963 CACGAATCGTTCCGCGGATCGCCC-TTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 ||||| ||| | || | || || | | ||||||| | |||| |||| | ||| Sbjct 833472 TACGAAACGTACGATGGCTGTCCGGTTAGCA-AGGGCATCCTGCAGTACGACATGTGGAA 833414 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATC---AAACA 95078 | || || | |||| ||||||| | | || | || ||| || || Sbjct 833413 CAAGGCCCCATCCGACCTGTGGGACTGGG---CCCCACTCAAGGAAAAAATCGCCAAGCA 833357 Query 95079 CGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCT 95138 ||| || |||| | || || | ||||| ||||| || || ||||| ||||| ||||| Sbjct 833356 CGGAGTCCGAAACTCCCTTCTCCTCGCCCCAATGCCAACCGCGTCCACCGCGCAAATCCT 833297 Query 95139 TGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGC 95198 ||||||||||| || |||||||| | |||||||||||| |||||| |||| ||||| | Sbjct 833296 CGGCAACAACGAATCCTTCGAACCGTACACCTCCAACGTCTACAACCGGCGCGTGCTGTC 833237 Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTG 95258 ||| || |||| ||| ||||| | || ||||| ||||| || || | |||| Sbjct 833236 CGGCGAGTTCCAGGTCGTCAACCACCATCTCCTCAAAGACCTCACCGAACTCGAGCTGTG 833177 Query 95259 GGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA 95318 || ||| | | |||||| || | | | |||||||||| ||||| ||||| | Sbjct 833176 GGACGACGACATGAAGAACAAAATCATCGCCAGCAACGGCTCCATCCAGCACATCGACGA 833117 Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATC 95364 ||| || || ||||| | ||||||||| || |||||||| ||| Sbjct 833116 AATCCCCAAGCACATCCGCGAGCTCTACAAAACGGTGTGGGAAATC 833071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494703590409160