Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq2646 143 2e-29 seq3024 89.7 4e-13 >seq2646 Length=347515 Score = 143 bits (158), Expect = 2e-29 Identities = 215/303 (71%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 |||||||| || ||||||| || ||||| | | ||| ||| ||| ||||| || Sbjct 216017 GCCGGGTTTGGAGTGACGGGAGGTGTCCACAGACTCTGGTGCCATCGAGCTTACAAAGCA 215958 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| | || | |||||||| || | |||| | || || |||||||||||| Sbjct 215957 AAGCTGCCGCTGCGGATCATCCTGGCGTGCTGTTACTCGATCGCCGGCCAGAACACCATC 215898 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCA 108519 | ||||||| ||||||| || | |||||||||||||| || |||| | |||||| Sbjct 215897 TACGACTGGGTGCGCGATCACCGGATCCACCACAAGTACTCGGAAACGAACGGCGACCCG 215838 Query 108520 CACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 |||||| | ||| |||| ||| || | | |||||||| ||||| ||| || || || Sbjct 215837 CACAACTCAAACCGGGGCTTCCTGTACGCCCACGTGGGTTGGCTGATGCTGCGAAAACAC 215778 Query 108580 CCCGACGTG-ATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGT 108638 || || ||| ||| | ||||| || |||||| ||||||| | |||||||||| Sbjct 215777 CCGGA-GTGCATCAAGAAGGGTCGCTTGATCGACATGTCGGACATCGAGGCCGATCCGGT 215719 Query 108639 GGT 108641 ||| Sbjct 215718 GGT 215716 Score = 100 bits (110), Expect = 2e-16 Identities = 197/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||| ||||| ||||| ||||| | ||| ||| ||||||| ||| || |||||||| Sbjct 196158 GCCGGTTTCGGGGTGACCGCCGGTGCCCACCGGCTGTGGACTCACCGGGCTTACAAGGCA 196099 Query 108400 AC-CGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCAT 108458 | | ||| | | | || |||| | ||||||| || | || ||||||||| | Sbjct 196098 AATCTACCCCTGC-GCGTTATCCTCATGTGCTGCTTCTGCATGTCCGGTCAGAACACCTT 196040 Query 108459 CCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCC 108518 | ||| | | || || | | |||||||||||||| || ||| |||||||| Sbjct 196039 GTACGACTGGATCCGTGACCATCGCATCCACCACAAGTACTCCGAAACGGACGCCGACCC 195980 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 |||||| | ||| |||| |||| ||| | ||||| || ||||| || ||| ||| | Sbjct 195979 GCACAACTCGAACCGGGGCTTCTTCTTCGCCCACGTCGGTTGGCTGTTGCTGAGGAAGCA 195920 Query 108579 CCCCGACGTG-ATCTCGGCCGGTCGAAAAATGGACATGACGGACAT 108623 || || ||| ||| | ||||| || |||||| ||||||| Sbjct 195919 TCCGGA-GTGCATCAAGAAGGGTCGGTTGATCGACATGTCGGACAT 195875 Score = 98.7 bits (108), Expect = 8e-16 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 108871 GTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGAC 108930 |||||| |||| || |||||||||| |||||||||||||||||||||||||||| ||| Sbjct 166650 GTGGCGTCGTTCGCGTTCGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCCTGGGAC 166591 Query 108931 TACAAGGCCGCCGAGTTGGGGAACGAC 108957 |||||| | |||||| | || ||| || Sbjct 166590 TACAAGACGGCCGAGCTCGGCAACTAC 166564 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918 || ||||| |||| ||| | |||| | ||||| || ||||||||||| ||||||||| Sbjct 208520 GAGAACAAGCTGGTCTCGGTGGTGGCCATGGGCGAAGGTTGGCACAACTATCACCACGTG 208461 Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAA 108953 || |||| ||||||||||| |||||| |||| || Sbjct 208460 TTTCCCTGGGACTACAAGGCGGCCGAGCTGGGCAA 208426 >seq3024 Length=776655 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 ||||| || || |||| || ||| ||||| || || || | ||||| ||||| Sbjct 257426 CCGTCACGCCCAGCCCGACCCGCCTCCTGATAGTACCCTTCGATAGATTTCGGCATCGAA 257485 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGAA 118298 || || ||||| |||||||||| || || || ||||||||||||||||| ||||||| | Sbjct 257486 TGGTGAATCACGTACCGCACGTCCGGCTTGTCAATGCCCATCCCGAACGCGATCGTCGCA 257545 Query 118299 CATATCACTCGGGTCTCGTTCGCCATCCA 118327 || | ||| | ||| || || ||||| Sbjct 257546 CACACCACCTTGATCTTGTCCGTGATCCA 257574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381758045793624